Pairwise Alignments

Query, 576 a.a., single-stranded-DNA-specific exonuclease RecJ from Dickeya dadantii 3937

Subject, 584 a.a., single-stranded-DNA-specific exonuclease RecJ from Sphingomonas koreensis DSMZ 15582

 Score =  281 bits (720), Expect = 4e-80
 Identities = 195/505 (38%), Positives = 274/505 (54%), Gaps = 24/505 (4%)

Query: 24  LLRRLYAQRGVRQMQELER----SLRGLL-DYRLLGGITQAVEVLRQALADNRRIVIVGD 78
           L+ +L   RG  + +ELE     S+R  + D  +   + +A E L  ++     + I GD
Sbjct: 35  LVTQLLLTRGCAR-EELEAHRSPSIRAFMPDPSIFRDMDRAAERLADSVERREAVTIFGD 93

Query: 79  FDADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEVVAQAAAKGAELIVTVDNG 138
           +D DGATS AL +  LR +G     Y +P+R  +GYG S E + +   +GA+LIVTVD G
Sbjct: 94  YDVDGATSAALLIRLLRDLGLDPRAY-IPDRLMEGYGPSGEALVRLKREGADLIVTVDCG 152

Query: 139 ISSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNL--SDCAFPSKALAGVGVAFY 196
             +   + +A   G  V+V DHH     LP A A++NPN    D       LA VGVA+ 
Sbjct: 153 AMAFDALAEARDAGAEVIVVDHHKCASELPVALALVNPNRLDEDEGRQHGHLAAVGVAWL 212

Query: 197 LMMALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPLDANNRILISQGLSRIRA 256
           L  AL   LR  G+FA R  AEP L +LLD+VALGTVADV  L   NR  ++QGL ++ A
Sbjct: 213 LGAALVRVLRGRGFFANR--AEPKLLDLLDIVALGTVADVAALKGLNRAFVAQGL-KVMA 269

Query: 257 GKCRPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSVGVELLLCNDIVQARM 316
            +   G+ AL+E S    A   A+DLGFALGPR+NA GR+    +GV LL   D  +AR 
Sbjct: 270 QRRNTGMNALIEASRLTRAP-TATDLGFALGPRINAGGRVGKSDLGVRLLTTEDADEARG 328

Query: 317 LASDLDALNQSRREIEAGMQVEALHLCEQLERSRDTLPLGLAMYHPQWHQGVVGILASRI 376
           +A +L+ LN+ RR IEA +Q  A    E +E       +        WH GV+GI+A R+
Sbjct: 329 IAEELNRLNEERRAIEAEVQQSA----EAIEAEGAVAVVAAR----GWHPGVIGIVAGRL 380

Query: 377 KERFHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFGGHAMAAGLSL 436
           KER  RP I  A   DGI KGSGRSIAG+ L  A+  L     GL++  GGHAMAAG+++
Sbjct: 381 KERLGRPAIVIAIGEDGIGKGSGRSIAGVDLGAAI--LAAKEAGLLIAGGGHAMAAGVTI 438

Query: 437 VEDRFDEFRQRFADLVGEWLDASQLEGVVWSDGELASPELTLGTAEMLREAGPWGQAFPE 496
            ED+         + + E ++ +  E  +  D  LA   +       +   GP+G  +P 
Sbjct: 439 AEDQIPALVAFLDEKLAETVERAAGERALLLDAVLAPGGVNPALVNAMEAGGPYGMGWPA 498

Query: 497 P-TFDGRFRLLQQRLVGERHLKVMV 520
           P    G  R+++  +VG  H++ +V
Sbjct: 499 PRVAAGPVRIIKCDVVGNGHVRAIV 523