Pairwise Alignments

Query, 576 a.a., single-stranded-DNA-specific exonuclease RecJ from Dickeya dadantii 3937

Subject, 572 a.a., single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  259 bits (663), Expect = 2e-73
 Identities = 168/561 (29%), Positives = 292/561 (52%), Gaps = 27/561 (4%)

Query: 24  LLRRLYAQRGVRQMQELERSLRGLL----DYRLLGGITQAVEVLRQALADNRRIVIVGDF 79
           +L +L  QRG+ +  + ++  R  L    D  L+  +  AVE L +A+    RI+I GD+
Sbjct: 30  ILGQLLVQRGITKAGDAKKFFRPQLPDLHDPFLMKDMDIAVERLNKAMGKKERILIYGDY 89

Query: 80  DADGATSTALTVLALRSMGGREVQYLVPNRFEDGYGLSPEVVAQAAAKGAELIVTVDNGI 139
           D DG T+ AL    ++      + Y +P+R+ +GYG+S + V  A+  G  LI+ +D GI
Sbjct: 90  DVDGTTAVALVYKFIQQFYSN-IDYYIPDRYNEGYGISKKGVDYASETGVGLIIVLDCGI 148

Query: 140 SSHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAFPSKALAGVGVAFYLMM 199
            +   +  A  +GI  ++ DHH+P + LP A A++N    D  +P   L+G GV F  M 
Sbjct: 149 KAVEEITYAKEKGIDFIICDHHVPDDILPPAVAILNAKRLDNTYPYTHLSGCGVGFKFMQ 208

Query: 200 ALRANLRECGWFAERGLAEPNLAELLDLVALGTVADVVPLDANNRILISQGLSRIRAGKC 259
           A   N          G+   +L  LLDLVA+   +D+VP+   NRIL   GL ++ +   
Sbjct: 209 AFAIN---------NGIEFHHLIPLLDLVAVSIASDIVPIMGENRILAYHGLKQLNSNP- 258

Query: 260 RPGIRALLEVSNRDAAQLVASDLGFALGPRLNAAGRLDDMSVGVELLLCNDIVQARMLAS 319
             G++A+++V      ++  SD+ F +GPR+NA+GR+ +    V+LL   D   A   A 
Sbjct: 259 SVGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQNGKEAVDLLTEKDFSAALEKAG 318

Query: 320 DLDALNQSRREIEAGMQVEALHLCEQLERSRDTLPLGLAMYHPQWHQGVVGILASRIKER 379
            ++  N++R++++  M  EA ++   LE   +     + +Y+ +WH+GV+GI+ASR+ E 
Sbjct: 319 QINQYNETRKDLDKSMTEEANNIVANLEGLSER--RSIVLYNEEWHKGVIGIVASRLTEV 376

Query: 380 FHRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFGGHAMAAGLSLVED 439
           ++RP +      D +  GS RS++G  +  A+E    C   L+  FGGH  AAGLS+  +
Sbjct: 377 YYRPAVVLTRT-DDMATGSARSVSGFDVYKAIEH---CR-DLLENFGGHTYAAGLSMKVE 431

Query: 440 RFDEFRQRFADLVGEWLDASQLEGVVWSDGELASPELTLGTAEMLREAGPWGQAFPEPTF 499
             + F +RF + V + +   Q   V+  D E+   ++T      L++  P+G    +P F
Sbjct: 432 NVEAFTRRFEEYVSQHILPEQTSAVINIDAEIDFRDITSKFFNDLKKFNPFGPDNIKPIF 491

Query: 500 DGR--FRLLQQRLVG--ERHLKVMVEPLGGGPLLDGIAFNVDTLLWPDSSVREVELAYKL 555
                +     ++VG  + H+K+ +       +++GIAF   + +    + R  ++ Y +
Sbjct: 492 CTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQSSHVRYIKTKRSFDICYTI 551

Query: 556 DVNEFRGKRSVQLLIEHLWPL 576
           + N  + +  VQL IE + P+
Sbjct: 552 EENTHK-RGEVQLQIEDIKPI 571