Pairwise Alignments

Query, 944 a.a., DNA polymerase I from Dickeya dadantii 3937

Subject, 949 a.a., DNA polymerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  684 bits (1764), Expect = 0.0
 Identities = 408/984 (41%), Positives = 577/984 (58%), Gaps = 81/984 (8%)

Query: 5   AENPLILVDGSSYLYRAYHAF--PPLTNGAGEPTGAMYGVLNMLRSLLQQYHPSHVAVVF 62
           ++N L L+D  + +YRAY+AF   P  N  G  T A+ G +N L  +L++ +PSH+ V F
Sbjct: 3   SDNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKENPSHIGVAF 62

Query: 63  DAKGKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRMVKAMGLPLLSVSGVEADDVIGTLA 122
           D  G TFR + FE YK+ R   P+ +R  +  +  ++ A  +P+L V+G EADDVIGTLA
Sbjct: 63  DPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADDVIGTLA 122

Query: 123 QQAERAGKPVLISTGDKDMAQLVTPNITLI---NTMNNTILGPDEVCAKYGIP-PSLIID 178
            +A R G    + T DKD  QLVT N+ +    +T    ++G +EV AK+ I  P+ +ID
Sbjct: 123 TEAGRQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQVID 182

Query: 179 FLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYADLDKIASLTFRGAKTMAAKLEQ 238
            L LMGD+SDNIPG PGVGEKTAQ L+   G ++ L    D++     +GA  +  K+E 
Sbjct: 183 MLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQL-----KGA--LKTKVET 235

Query: 239 NKELAYLSYQLATIKTDVELELGCEQLTVNEPDVAELHELFTRYEFKRWLADVEDGKWLQ 298
           NKEL   S  LATIK DV ++L  ++L   + D   L ++F   EF+  +  V   +   
Sbjct: 236 NKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKENSA 295

Query: 299 GGRKSQPAVPFVKATVEATPKEAASVLS---QDG-------------------------- 329
           GG      V     +  AT K A S L    ++G                          
Sbjct: 296 GG------VTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTGNEAGEAKKSNLET 349

Query: 330 -------YVTILDEKVLLDWLERIKTAALFSFDTETDGLDTLTANLVGVSLAIKPGEAAY 382
                  Y  I  EK   + ++++ T+ + S DTET G + + A LVG+S +I   +A Y
Sbjct: 350 LETLNCDYQLIDTEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSITENQAFY 409

Query: 383 LPLGHITSRVYSSNIYSSTVSPATRMSTQLDRDRVLALLKPLLEDDGIRKIGQNLKFDKG 442
           +P+                  P  R        +++   +P+ E++   K+GQN+K+D  
Sbjct: 410 VPV------------------PDNREEAL----KIVNEFRPVFENENSLKVGQNIKYDMI 447

Query: 443 VMARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLSERYLQHKTITFEEIAG-KGKNQLT 501
           V+  YG+ ++G  FDTM+  YVL     RH MD L+E YL ++TI  +E+ G KGKNQ  
Sbjct: 448 VLENYGVQVKGALFDTMIAHYVLQPEL-RHGMDYLAEIYLHYQTIHIDELIGPKGKNQKN 506

Query: 502 FDQIPLAQASVYAAEDADVTLRLHETLWAKLEPQQELRKVFQNIDMPLVPVLSRIERTGV 561
              +       YA EDADVTL+L   L  +L+ + +  ++F +I+MPLVPVL  IER GV
Sbjct: 507 MRDLDPKDIYRYACEDADVTLKLKNVLEKELK-ENDAERLFYDIEMPLVPVLVNIERNGV 565

Query: 562 LIDTTILAEHSRELTQRLAELEVQAHELAGEAFNLSSPKQLGAILYEKLQL-PVIKKTPK 620
           L+DT  L + S   T ++  +E + +ELAGE FN++SPKQ+G +L++KL++    KKT  
Sbjct: 566 LLDTEALKQSSVHFTAQMQRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKT 625

Query: 621 GAPSTNEEVLAELALDYPLPKLILEHRGLAKLKSTYTDKLPQMINPLTRRVHTSYHQAVT 680
           G   T+EEVL  L   +P+ + ILEHRGL KL  TY D LPQ+INP T RVHTS++Q VT
Sbjct: 626 GQYVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVT 685

Query: 681 ATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYRILAADYSQIELRIMAHLSRDAGLL 740
           +TGRLSSS+PNLQNIP+R+E G+ IR+AFI  EG    +ADYSQIELRIMAHLS D  ++
Sbjct: 686 STGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745

Query: 741 RAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSAFGLSRQLAIPRSEA 800
            AF    DIH ATAA+++ + L  V ++ RR AK  NFG+IYG+S FGL+ ++ + R EA
Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805

Query: 801 QKYMNLYFERYPGVQEYMERTRQQAVDQGYVSTLDGRRLYLPDIHSRNVNSRKAAERAAI 860
           ++ ++ YFE YP V+ YME++ Q A ++GYV T+  R+ +LPDI+SRN   R  AER AI
Sbjct: 806 KELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865

Query: 861 NAPMQGTAADIIKKAMIAIDAWLRQEKPLVTMLMQVHDELVFEVHHSVLDEASAKIRNLM 920
           NAP+QG+AADIIK AM  I    + E     M++QVHDEL F V  +  +     +   M
Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEM 925

Query: 921 EGCMQLDVPLQVDIGTGSNWDQAH 944
           E   ++ VPL+ D G G NW +AH
Sbjct: 926 EHAYRMHVPLKADCGWGKNWLEAH 949