Pairwise Alignments

Query, 315 a.a., tRNA pseudouridine synthase B from Cupriavidus basilensis FW507-4G11

Subject, 314 a.a., tRNA pseudouridine(55) synthase TruB from Escherichia coli ECOR38

 Score =  249 bits (635), Expect = 8e-71
 Identities = 141/315 (44%), Positives = 190/315 (60%), Gaps = 20/315 (6%)

Query: 10  PRQPRREVHGVLLLDKPLGLSSNDALVRAKRMLRALKAGHTGTLDPLATGLLPLCFGEAT 69
           PR+  R+++GVLLLDKP G+SSNDAL + KR+  A +AGHTG LDPLATG+LP+C GEAT
Sbjct: 4   PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63

Query: 70  KFSQDLLEADKTYEATVRLGLKTATGDAEGEVIAERPVTCDVEALRAAMLRFAGEIEQVP 129
           KFSQ LL++DK Y    RLG +T T DA+G+++ ERPVT   E L AA+  F G+IEQ+P
Sbjct: 64  KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIP 123

Query: 130 PMHSALKKDGRPLYEYARAGQTVERAARRVTIHEITLLDCGLPQVPTFSMRVTCSKGTYI 189
            M+SALK  G+ LYEYAR G  V R AR +T++E+  +     +     + + CSKGTYI
Sbjct: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI---RHEGNELELEIHCSKGTYI 180

Query: 190 RTLAEDIGEALGCGAHLTGLRRTAVGDLSLEGAVTLEQ----IEQRSDEERPG------M 239
           RT+ +D+GE LGCGAH+  LRR AV    +E  VTLE     +EQ   ++ P       +
Sbjct: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240

Query: 240 LAPVDALLQRCVAVTLDEAAMARFLQGQRIAQRDLPAGVALAEDELASVYGGEPRRLLGV 299
           L P+D+       V L   +   F  G  +     P       + L  V  GE  + +G+
Sbjct: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL------EGLVRVTEGENGKFIGM 294

Query: 300 ARM-REGALRPERLV 313
             +  EG + P RLV
Sbjct: 295 GEIDDEGRVAPRRLV 309