Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

 Score = 1115 bits (2883), Expect = 0.0
 Identities = 589/1153 (51%), Positives = 779/1153 (67%), Gaps = 17/1153 (1%)

Query: 8    VPFANLPLVKAGQ-RYTVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDAQRLAEE 66
            +P   LPL+ A   +     LPG+A +LA+A  AS  +    +L    A++  A+RL +E
Sbjct: 1    MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLT---ADSQSAERLEQE 57

Query: 67   IPWFAPSLRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQGGQCDIMLVPAQTALYRL 126
            + +FAP L V   PDWETLPYD FSPHQD++S+R+A+L+ +      +++VP  TAL+RL
Sbjct: 58   LSFFAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRL 117

Query: 127  APPAFLAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSP 186
            AP  FL   +     G+KLD   ++ +   +GY  V  V   GE++VRG LIDLFPMGS 
Sbjct: 118  APTKFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSK 177

Query: 187  LPYRIDLFGNEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFEG 246
            LPYRIDLF +EIET+R FDP+ QRS+  V  V+LLP REFPL   A T F+ R+RE F+ 
Sbjct: 178  LPYRIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDV 237

Query: 247  DPSKSTIYKDIGNGVPSAGIEYYLPLFFESSATVFDYLPANSQLAFAGDVPDAIRRFWAD 306
            D  +  I++D+ +G+  AGIEYYLPLFF+ ++T+FDYLP ++Q+     +  A   FW D
Sbjct: 238  DFRRCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWND 297

Query: 307  TTQRYNFMRHDRERPLLPPAALFLSEEQFFTGAKPLARLVL--QGTATG---DTVPLAES 361
               RY   R D  RPLLPPA LFL  E  F   K   R+V   Q   TG   +  P A +
Sbjct: 298  VRNRYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGAGRERFPAA-T 356

Query: 362  LPDVSVNRRAEDPLVNLEALLLKKDRRVLMCADSAGRRETLLQLFGESGLRPQPIDDYAA 421
            LPD+++  +A  PL  L   L     RVL  A+SAGRRE LL+L     LRP+ +D +  
Sbjct: 357  LPDLAIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPD 416

Query: 422  FLAGDSHFSIVVAPLQSGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRKQEQASAVDSM 481
            F+      +I +APL  G  +        LA + E+ L+     +  RR++   +  D++
Sbjct: 417  FVKSKERLAITIAPLDEGLLLDDPA----LALIAESPLFGQRVMQRRRREKRADANNDAV 472

Query: 482  VRDLAELKIGDPVVHSEHGIGRYQGLVSLDLGQGEEEFLHLDYEKGSKLYVPVHQLHVIS 541
            +++L EL+ G PVVH +HG+GRY GL +L++     EFL ++Y +G+KLYVPV  LH+I+
Sbjct: 473  IKNLTELREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIA 532

Query: 542  RYSGADPDTAPLHSLGSGQWDRAKRRAAQQIRDTAAELLNLYARRALRQGHAFELTPKDY 601
            RY+G+D   APLH LGS  W +AKR+AA+Q+RD AAELL++YARRA R+G+AF     DY
Sbjct: 533  RYTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADY 592

Query: 602  EKFAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGK 661
              F+  F FEETPDQ   I AV ADM + KPMDRLVCGDVGFGKTEVA+RAAF+AV GGK
Sbjct: 593  ATFSAGFAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGK 652

Query: 662  QVAILAPTTLLAEQHFQNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQINDGTADIVIGT 721
            QVAIL PTTLLA+QH+ +  DRFA+WPV +  +SRFK+ KE++ AI  + +G  DIVIGT
Sbjct: 653  QVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGT 712

Query: 722  HKMLSDDVKFQRLGLVVIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPIPRTLGMALEGL 781
            HK+LSDDVK + LGLV+IDEEHRFGVRQKE LK LR+EVD+LTLTATPIPRTL MA+ G+
Sbjct: 713  HKLLSDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGM 772

Query: 782  RDFSVIATAPQKRLAIKTFVRREEDGVVREAILRELKRGGQVYFLHNEVDTIENKRAKLA 841
            RD S+IAT P +RL+++TFV  +    V+EA+LREL RGGQVY+LHN+V TIE   A LA
Sbjct: 773  RDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLA 832

Query: 842  ELVPEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRADK 901
            ELVPEARIA+ HGQM ERELE+VM DF  +R N+L+ +TIIETGIDVP+ANTI+I RADK
Sbjct: 833  ELVPEARIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADK 892

Query: 902  FGLAQLHQLRGRVGRSHHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEELGSGFYLAMHDL 961
            FGLAQLHQLRGRVGRSHHQAYAY+L    + ++  A++RLEAI   ++LG+GF LA +DL
Sbjct: 893  FGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDL 952

Query: 962  EIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAVTTEINLGTPA 1021
            EIRGAGE+LGD QSG+I  +GF LY +ML  AVK+++ G++P+L  PL    EINL  PA
Sbjct: 953  EIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPA 1012

Query: 1022 LLPSDYCTDVHERLSLYKRLANCEAAERVDDIQEELIDRFGRLPPQAQALIETHRLRIAA 1081
            L+P +Y  DVH RL LYKR+A+    E + D+Q E+IDRFG LP   + L+    L++ A
Sbjct: 1013 LIPEEYLPDVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQA 1072

Query: 1082 VPLGVRKIDASDAAISMQFLPNPPIDAMKIIDLV--QKNRHIKLAGQDKLRIEAKMPDVA 1139
              LG++K+DA      ++F    P+D + +I L+  Q NR+ K  G    +    M    
Sbjct: 1073 EQLGIKKVDAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRY-KFEGATLFKFMVPMERAE 1131

Query: 1140 VRAQTIKHTLRQL 1152
             R  T++    +L
Sbjct: 1132 ERFNTLEALFERL 1144