Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 1102 bits (2850), Expect = 0.0
 Identities = 579/1137 (50%), Positives = 764/1137 (67%), Gaps = 12/1137 (1%)

Query: 21   RYTVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDAQRLAEEIPWFAPSLRVRLLP 80
            + T   LPG+A +LA+A  AS       +L    A++  A RL +E+ +FAP L V   P
Sbjct: 15   KQTWGNLPGAALSLAIAEAASSAGRFTLLLT---ADSQAADRLEQELRFFAPDLPVLPFP 71

Query: 81   DWETLPYDSFSPHQDLVSERLATLHDIQGGQCDIMLVPAQTALYRLAPPAFLAAYTFFFK 140
            DWETLPYD FSPHQD++S+R+A+L+ +      I++VP  TAL+RLAP  FL   +    
Sbjct: 72   DWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSSLVLD 131

Query: 141  QGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPLPYRIDLFGNEIET 200
             G+ +D   ++ +   +GY  V  V   GE++VRG LIDLFPMGS LPYRIDLF NEIET
Sbjct: 132  VGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIET 191

Query: 201  IRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFEGDPSKSTIYKDIGNG 260
            +R FDP+TQRS+  V  VRLLP REFP+     T F+ R+RE F+ D  +S I++D+ +G
Sbjct: 192  LRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDLASG 251

Query: 261  VPSAGIEYYLPLFFESSATVFDYLPANSQLAFAGDVPDAIRRFWADTTQRYNFMRHDRER 320
            +  AGIEYYLPLFFE ++T+FDYLP ++Q+     V  A   FW D   RY   R D  R
Sbjct: 252  IIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDRRGDLSR 311

Query: 321  PLLPPAALFLSEEQFFTGAKPLARLVLQGTATGDTVPL----AESLPDVSVNRRAEDPLV 376
            PLLPPA LFL  E  F   K   R+V+        V      A +LP++++  +A  PL 
Sbjct: 312  PLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARALPNLAIEAKANQPLA 371

Query: 377  NLEALLLKKDRRVLMCADSAGRRETLLQLFGESGLRPQPIDDYAAFLAGDSHFSIVVAPL 436
             L   L +   RVL  A+SAGRRE LL+L     LRP  ++ +  F+ G    +I +APL
Sbjct: 372  ELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITGAERLAITIAPL 431

Query: 437  QSGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRKQEQASAVDSMVRDLAELKIGDPVVH 496
              G  +        LA + E+ L+     +  RR +   +A D+++++L EL+ G PVVH
Sbjct: 432  DDGLLLDDPG----LALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVH 487

Query: 497  SEHGIGRYQGLVSLDLGQGEEEFLHLDYEKGSKLYVPVHQLHVISRYSGADPDTAPLHSL 556
             +HG+GRY GL +L++     EFL L+Y + +KLYVPV  LH+I+RY+G+D   APLH L
Sbjct: 488  IDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRL 547

Query: 557  GSGQWDRAKRRAAQQIRDTAAELLNLYARRALRQGHAFELTPKDYEKFAESFGFEETPDQ 616
            GS  W +AKR+AA+Q+RD AAELL++YARRA R+G+AF     DY  F+  F FEETPDQ
Sbjct: 548  GSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQ 607

Query: 617  AAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQH 676
             AAI AV ADM + KPMDRLVCGDVGFGKTEVA+RAAF+AV  G+QVA+L PTTLLA+QH
Sbjct: 608  QAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQH 667

Query: 677  FQNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQINDGTADIVIGTHKMLSDDVKFQRLGL 736
            + +  DRFA+WPV +  +SRFK+ KE+  A   + +G  DI+IGTHK+L DDV+F+ LGL
Sbjct: 668  YNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGL 727

Query: 737  VVIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLA 796
             +IDEEHRFGVRQKE LK LR+EVD+LTLTATPIPRTL MA+ G+RD S+IAT P +RL+
Sbjct: 728  AIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLS 787

Query: 797  IKTFVRREEDGVVREAILRELKRGGQVYFLHNEVDTIENKRAKLAELVPEARIAVAHGQM 856
            ++TFV  +    V+EA+LREL RGGQVY+LHN+V TIE   A LAELVPEARI + HGQM
Sbjct: 788  VRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQM 847

Query: 857  HERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGR 916
             ERELE+VM DF  +R N+L+ +TIIETGIDVP+ANTI+I RADKFGLAQLHQLRGRVGR
Sbjct: 848  RERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGR 907

Query: 917  SHHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSG 976
            SHHQAYAY+L    + +S  A++RLEAI   ++LG+GF LA +DLEIRGAGE+LG+ QSG
Sbjct: 908  SHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSG 967

Query: 977  EIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAVTTEINLGTPALLPSDYCTDVHERLS 1036
            +I  +GF LY +ML  AVK+++ G +P+L  PL    EINL  PAL+P DY  DVH RL 
Sbjct: 968  QIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLI 1027

Query: 1037 LYKRLANCEAAERVDDIQEELIDRFGRLPPQAQALIETHRLRIAAVPLGVRKIDASDAAI 1096
            LYKR+A+    E + D+Q E+IDRFG LP   + L+    L++ A  LG++K+DA     
Sbjct: 1028 LYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGG 1087

Query: 1097 SMQFLPNPPIDAMKIIDLVQ-KNRHIKLAGQDKLRIEAKMPDVAVRAQTIKHTLRQL 1152
             ++F    P+D + +I L+Q + +  K  G  + R    M     R  T++    +L
Sbjct: 1088 KLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEALFERL 1144