Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1160 a.a., Transcription-repair coupling factor from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1467 bits (3798), Expect = 0.0
 Identities = 744/1153 (64%), Positives = 900/1153 (78%), Gaps = 16/1153 (1%)

Query: 12   NLPLVKAGQRYTVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDAQRLAEEIPWFA 71
            +LP +  G+R+TV    GSADAL LA   ++ +    + A+V A+A DAQRL +E+ +FA
Sbjct: 2    DLPKLTPGKRHTVPHPGGSADALMLAQLGAREKAEGRLTAIVTADANDAQRLIDEMAFFA 61

Query: 72   PSLRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQGGQ----CDIMLVPAQTALYRLA 127
            P LR  L PDWETLPYD+FSPHQDL+SERLATL  I         D++L+PA TALYRLA
Sbjct: 62   PGLRCALFPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVLIPATTALYRLA 121

Query: 128  PPAFLAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPL 187
            PP+FLA YTF FK  +KLDEA LK Q TLAGY+HV+ V+ PGEY+VRGGLIDLFPMGS +
Sbjct: 122  PPSFLAGYTFHFKVKQKLDEARLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGSLV 181

Query: 188  PYRIDLFGNEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFEGD 247
            PYR+DLF +EI++IR FDPD+QRSLYPV EVRLLPGREFP+DDAAR  FR RWREL EGD
Sbjct: 182  PYRVDLFDDEIDSIRTFDPDSQRSLYPVNEVRLLPGREFPMDDAARAKFRSRWRELLEGD 241

Query: 248  PSKSTIYKDIGNGVPSAGIEYYLPLFFESSATVFDYLPANSQLAFAGDVPDAIRRFWADT 307
            P+KS IYKDIGNGV +AGIEYYLPLFF+ +ATVFDYL  ++ +   GD+  A +RFW DT
Sbjct: 242  PTKSRIYKDIGNGVATAGIEYYLPLFFDDTATVFDYLGTDATVVLHGDLEPAFQRFWQDT 301

Query: 308  TQRYNFMRHDRERPLLPPAALFLSEEQFFTGAKPLARLVLQGTATG-DTVPLAESLPDVS 366
              R+  +R D ERP+LPP ALFL+ EQF+T A   A+ V++      +     + L D+S
Sbjct: 302  KDRHRLLRGDAERPVLPPEALFLATEQFYTRANEHAQYVVRPAQQDIEHGAHVQKLGDLS 361

Query: 367  VNRRAEDPLVNLEALLLKKDRRVLMCADSAGRRETLLQLFGESGLRPQPIDDYAAFLAGD 426
            V R AEDPL  L+A +     RVL+ A+S GRRE+LL     SG+ P   D  A F A D
Sbjct: 362  VVRGAEDPLARLQAHIRNTAHRVLLLAESDGRRESLLDFLRASGVHPPAFDSLAEFQASD 421

Query: 427  SHFSIVVAPLQSGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRKQEQASAVDSMVRDLA 486
                I  A L  GF+     GI+   FVTE EL+A       RRKQEQ S VD++++DL+
Sbjct: 422  EKTGIATAALAVGFSWLD-DGID---FVTETELFAAGPTTRRRRKQEQVSDVDALIKDLS 477

Query: 487  ELKIGDPVVHSEHGIGRYQGLVSLDLGQGE-------EEFLHLDYEKGSKLYVPVHQLHV 539
            EL +GDPVVH+ HGIGRY+GLV++D+G+         +EFLHL+Y   + LYVPV QL +
Sbjct: 478  ELNVGDPVVHNAHGIGRYRGLVNMDMGEKNPDGSPALQEFLHLEYADKAVLYVPVSQLQL 537

Query: 540  ISRYSGADPDTAPLHSLGSGQWDRAKRRAAQQIRDTAAELLNLYARRALRQGHAFELTPK 599
            I RY+G   D APLH LGSGQWD+AKR+AA+Q+RD AAELLN+YARRA RQGHAF  + +
Sbjct: 538  IGRYTGVSADEAPLHKLGSGQWDKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRYSAQ 597

Query: 600  DYEKFAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMG 659
            DYE FA  FGFEET DQ  AI AVI DM S +PMDRLVCGDVGFGKTEVALRAAFVAV G
Sbjct: 598  DYEVFANDFGFEETADQRGAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTG 657

Query: 660  GKQVAILAPTTLLAEQHFQNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQINDGTADIVI 719
            G+QVA LAPTTLLAEQHFQ LSDRF++WPV++ E+SRF++ KEI  A K + DG+ DIV+
Sbjct: 658  GRQVAFLAPTTLLAEQHFQTLSDRFSKWPVKVAEMSRFRSAKEITAAAKGLADGSVDIVV 717

Query: 720  GTHKMLSDDVKFQRLGLVVIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPIPRTLGMALE 779
            GTHK+LS+ VKF+ LGL++IDEEHRFGVR KE +K LRAEVDVLTLTATPIPRTLGMALE
Sbjct: 718  GTHKLLSESVKFKDLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALE 777

Query: 780  GLRDFSVIATAPQKRLAIKTFVRREEDGVVREAILRELKRGGQVYFLHNEVDTIENKRAK 839
            GLRD SVIATAPQ+RLAIKTFVR E +GV+REA+LRELKRGGQVYFLHNEV+TIEN+R K
Sbjct: 778  GLRDLSVIATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVETIENRRQK 837

Query: 840  LAELVPEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRA 899
            L E++PEARIA+AHGQM ERELERVMRDFVA+R N+LLC+TIIETGIDVPTANTI++ RA
Sbjct: 838  LEEILPEARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPTANTIVMSRA 897

Query: 900  DKFGLAQLHQLRGRVGRSHHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEELGSGFYLAMH 959
            DKFGLAQLHQLRGRVGRSHHQAYAY++V D+EGL+K A +RL+AIQQMEELGSGFYLAMH
Sbjct: 898  DKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKHAAQRLDAIQQMEELGSGFYLAMH 957

Query: 960  DLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAVTTEINLGT 1019
            DLEIRGAGEVLG+ QSG + E+GFQLY +ML+ AV SLKAG+EPDL++PL+VTT+INL  
Sbjct: 958  DLEIRGAGEVLGEHQSGNMLEVGFQLYNEMLSEAVSSLKAGREPDLLSPLSVTTDINLHA 1017

Query: 1020 PALLPSDYCTDVHERLSLYKRLANCEAAERVDDIQEELIDRFGRLPPQAQALIETHRLRI 1079
            PALLP+DYC DVH RLS YK+LA  ++ ++VD + EE++DRFG+LPPQAQ LI+ HRLR 
Sbjct: 1018 PALLPNDYCGDVHLRLSFYKKLATAKSTDQVDALLEEIVDRFGKLPPQAQTLIDVHRLRC 1077

Query: 1080 AAVPLGVRKIDASDAAISMQFLPNPPIDAMKIIDLVQKNRHIKLAGQDKLRIEAKMPDVA 1139
             + P GV K+DA+    ++ F  NPP + M+II+L+QKNRHIKLAG DKLRIE  +P+V 
Sbjct: 1078 ISTPYGVVKVDAAPGVTNITFRANPPFEPMRIIELIQKNRHIKLAGNDKLRIERPLPEVK 1137

Query: 1140 VRAQTIKHTLRQL 1152
             R Q ++  LR L
Sbjct: 1138 DRVQLVRDVLRSL 1150