Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1028 bits (2658), Expect = 0.0
 Identities = 556/1160 (47%), Positives = 758/1160 (65%), Gaps = 26/1160 (2%)

Query: 1    MPEANRPVPFANLPLVKAGQRYTVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDA 60
            MPE  R      LP  KAG +  +  L G+A A  +A  A +H   V ++A    NA+  
Sbjct: 1    MPEKQR----YTLP-TKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNAL-- 53

Query: 61   QRLAEEIPWFAPSLRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQGGQCDIMLVPAQ 120
             RL +EI  F   + V  L DWETLPYDSFSPHQ+++S RL+TL+ +   Q  +++VP  
Sbjct: 54   -RLHDEIRQFTDQM-VMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVN 111

Query: 121  TALYRLAPPAFLAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDL 180
            T + R+ P ++L  +    K+G++L   AL+AQ   AGY HV  VM  GEY+ RG L+DL
Sbjct: 112  TLMQRVCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDL 171

Query: 181  FPMGSPLPYRIDLFGNEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRW 240
            FPMGS  PYR+D F +EI+++R FD DTQR+L  V+ + LLP  EFP D AA   FR +W
Sbjct: 172  FPMGSEQPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQW 231

Query: 241  RELFEGDPSKSTIYKDIGNGVPSAGIEYYLPLFF-ESSATVFDYLPANSQLAFAGDVPDA 299
            R+ FE       IY+ +  G   AGIEY+ PLFF E    +F Y PAN+ +   G +  +
Sbjct: 232  RDTFEVKRDAEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETS 291

Query: 300  IRRFWADTTQRYNFMRHDRERPLLPPAALFLSEEQFFTGAKPLARLVLQGT----ATGDT 355
              RF ADT  R+     D  RPLLPP AL+L  ++ F+  K   RL L+         +T
Sbjct: 292  AERFQADTLARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANT 351

Query: 356  VPLAESLPDVSVNRRAEDPLVNLEALLLKKDRRVLMCADSAGRRETLLQLFGESGLRPQP 415
                + LPD+++  + + PL  L   L      V+   +S GRRE L +L     + P+ 
Sbjct: 352  NLGFQKLPDLAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKR 411

Query: 416  IDDYAAFLAGDSHFSIVVAPLQSGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRKQEQA 475
            I       A D+   +++   + GF          LA + E++L      R  RR+ +  
Sbjct: 412  I--LRLDEAQDAGRYLMIGAAEHGFIDTQRN----LALICESDLLG---ERVARRRLDSR 462

Query: 476  SAV--DSMVRDLAELKIGDPVVHSEHGIGRYQGLVSLDLGQGEEEFLHLDYEKGSKLYVP 533
              +  D+++R+LAEL +G PVVH EHG+GRY G+ +L+ G  + E+L L Y   +KLYVP
Sbjct: 463  RTINPDTLIRNLAELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVP 522

Query: 534  VHQLHVISRYSGADPDTAPLHSLGSGQWDRAKRRAAQQIRDTAAELLNLYARRALRQGHA 593
            V  LH+ISRY+G   ++APLH LG   W RA+++AA+++RD AAELL++YA+RA ++G A
Sbjct: 523  VSSLHLISRYAGGAEESAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582

Query: 594  FELTPKDYEKFAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAA 653
            F+   + Y+ F +SF FE TPDQA AI AV++DM     MDRLVCGDVGFGKTEVA+RAA
Sbjct: 583  FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 642

Query: 654  FVAVMGGKQVAILAPTTLLAEQHFQNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQINDG 713
            F+AV   KQVA+L PTTLLA+QH+ N  DRFA WPVRI  LSRF++ KE    + +  +G
Sbjct: 643  FLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG 702

Query: 714  TADIVIGTHKMLSDDVKFQRLGLVVIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPIPRT 773
              DI+IGTHK+L  DVK + LGL+++DEEHRFGVR KE +K +RA+VD+LTLTATPIPRT
Sbjct: 703  KIDILIGTHKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRT 762

Query: 774  LGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVVREAILRELKRGGQVYFLHNEVDTI 833
            L MA+ G+RD S+IAT P +RLA+KTFVR  +  VVREAILRE+ RGGQVY+L+N+V+ I
Sbjct: 763  LNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENI 822

Query: 834  ENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANT 893
            +    +LAELVPEARIA+ HGQM ERELERVM DF  +R N+L+CTTIIETGID+PTANT
Sbjct: 823  QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882

Query: 894  ILIHRADKFGLAQLHQLRGRVGRSHHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEELGSG 953
            I+I RAD FGLAQLHQLRGRVGRSHHQAYA++L    + ++  AQ+RLEAI  +E+LG+G
Sbjct: 883  IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAG 942

Query: 954  FYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAVTT 1013
            F LA HDLEIRGAGE+LG++QSG +  IGF LY ++L  AV +LKAG+EP L    +  T
Sbjct: 943  FALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT 1002

Query: 1014 EINLGTPALLPSDYCTDVHERLSLYKRLANCEAAERVDDIQEELIDRFGRLPPQAQALIE 1073
            E+ L  P+LLP D+  DV+ RLS YKR+A+ +    +++I+ ELIDRFG LP  A+ L++
Sbjct: 1003 EVELRMPSLLPDDFIPDVNTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLD 1062

Query: 1074 THRLRIAAVPLGVRKIDASDAAISMQFLPNPPIDAMKIIDLVQKN-RHIKLAGQDKLRIE 1132
              RLR  A  LG+RK++ ++   +++F     +D   +I L+QK  +H +L G  +L+  
Sbjct: 1063 IARLRQQAQKLGIRKLEGNEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFI 1122

Query: 1133 AKMPDVAVRAQTIKHTLRQL 1152
              + +   R   ++  ++QL
Sbjct: 1123 QDLSERKTRIDWVRQFMQQL 1142