Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  549 bits (1414), Expect = e-160
 Identities = 284/661 (42%), Positives = 425/661 (64%), Gaps = 10/661 (1%)

Query: 451  LAFVTEAELYAGTARRTGRRKQEQASAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVSL 510
            +A  T+ +++    R    +K  +  A+   +++L  L+ GD VVH ++G+GR+ GL  +
Sbjct: 402  IACYTDHQIFERYHRYKSHKKASKTKALT--LKELKTLQAGDYVVHVDYGVGRFAGLEKV 459

Query: 511  DLGQGEEEFLHLDYEKGSKLYVPVHQLHVISRYSGADPDTAPLHSLGSGQWDRAKRRAAQ 570
            ++    +E + L +     LYV +H LH IS+YSG +     +  LGS +W+  K++  +
Sbjct: 460  EVNDNFQEAVRLIFRDDDLLYVNIHSLHKISKYSGQEGTLPTMSKLGSPEWENKKKKVKR 519

Query: 571  QIRDTAAELLNLYARRALRQGHAFELTPKDYEKFAESFGFEETPDQAAAIAAVIADMTSG 630
            +++D A +L+ LYA+R    GH +        +   SF FE+TPDQA A   V ADM   
Sbjct: 520  KVKDIAKDLIALYAKRRNASGHQYAPDSVLQVELESSFIFEDTPDQAVATGDVKADMEKP 579

Query: 631  KPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHFQNLSDRFAEWPVR 690
             PMDRLVCGDVGFGKTEVA+RAAF A+   KQVA+L PTT+LA QH++   +R   +PV+
Sbjct: 580  YPMDRLVCGDVGFGKTEVAIRAAFKAINDRKQVAVLVPTTILAMQHYRTFKERLEGFPVK 639

Query: 691  IVELSRFKTKKEIDGAIKQINDGTADIVIGTHKMLSDDVKFQRLGLVVIDEEHRFGVRQK 750
            +  ++RF+T K++    KQ+  G  DI++GTH++++ DV+F+ LGL++IDEE +FGV+ K
Sbjct: 640  VDYINRFRTTKQVKEITKQVTSGEIDILVGTHRIVNKDVQFKDLGLLIIDEEQKFGVKVK 699

Query: 751  EMLKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVVR 810
            + LK LR  VDVLTLTATPIPRTL  +L G RD SVIAT P  R  + T +   E+ V+R
Sbjct: 700  DQLKELRVNVDVLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPVTTEIHTFEEEVIR 759

Query: 811  EAILRELKRGGQVYFLHNEVDTIENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVA 870
            +A+ REL+RGGQV+F+HN V  I++    +  LVP+A+IA AHGQM  ++LE++M  F+ 
Sbjct: 760  DAVSRELQRGGQVFFVHNRVGEIDSIANLIMRLVPDAKIAGAHGQMDGKQLEKIMVKFIE 819

Query: 871  RRDNILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQAYAYMLVHDV 930
               ++L+ T IIE+G+D+P ANTI+I+RA  FGL+ LHQ+RGRVGRS+ +AY Y+L   +
Sbjct: 820  GEFDVLVSTNIIESGLDIPNANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTSPM 879

Query: 931  EGLSKLAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDML 990
             GL+  A++RL+ +++  +LG GF +AM DL+IRGAG +LG +QSG I ++GF++Y  +L
Sbjct: 880  SGLTAEARKRLQTLEEFSDLGDGFKVAMRDLDIRGAGNLLGAEQSGFITDLGFEMYHKIL 939

Query: 991  NAAVKSLKAGK-----EPDLMAPLAVTTE---INLGTPALLPSDYCTDVHERLSLYKRLA 1042
            + AV+ LK  +     E DL   + V  +   I      L+P DY +++ ERL+LY +L 
Sbjct: 940  DEAVQELKENEFASLFEVDLKEKVKVLVQDCVIETDMELLIPEDYVSNISERLNLYSKLD 999

Query: 1043 NCEAAERVDDIQEELIDRFGRLPPQAQALIETHRLRIAAVPLGVRKIDASDAAISMQFLP 1102
            N +  E +      + DRFG +PP  + L+ET RLR  A  LG  K+      +   F+P
Sbjct: 1000 NIKTEEALTKFAHAVSDRFGPIPPVVEDLMETVRLRWLAEGLGFEKLVLKSGQMKCYFVP 1059

Query: 1103 N 1103
            +
Sbjct: 1060 S 1060



 Score = 87.4 bits (215), Expect = 6e-21
 Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 19  GQRYTVSGLPGSADALALAAYAS-QHRERVPMLAVVCANAVDAQRLAEEIPWFAPSLRVR 77
           G  +   G+ GS D + LA + + +H   +    ++  +  +A  LA ++      +   
Sbjct: 28  GSNFAFKGISGSMDMVLLATFINLRHSSHL----IIAHDKEEAAYLASDLSSLLDRVTPH 83

Query: 78  LLPDWETLPYDSFSPHQDLVSERLATLHDIQGGQCDI-MLVPAQTALY-RLAPPAFLAAY 135
           + P     PY         V  R   L+ +      + ++V    ALY ++     L   
Sbjct: 84  IFPSSYKRPYQHEEVDNANVLMRAEILNKVLSSDTKMEIIVSYPEALYEKVINKKSLQEN 143

Query: 136 TFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPLPYRIDLFG 195
           TF  K GEK+D   +    +   +E    V  PG++++RGG+ID+F   +  PYRI+LFG
Sbjct: 144 TFTAKVGEKVDVEFITELLSTYDFEKTDFVYEPGQFAIRGGIIDVFSFANEYPYRIELFG 203

Query: 196 NEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAF 236
            EIE+IR FD ++Q S   +  + ++P  +  L    R +F
Sbjct: 204 KEIESIRTFDTESQLSEESLDHISIIPNVQTKLMQEVRQSF 244