Pairwise Alignments

Query, 565 a.a., single-stranded DNA exonuclease from Cupriavidus basilensis FW507-4G11

Subject, 569 a.a., ssDNA-specific exonuclease RecJ from Pseudomonas putida KT2440

 Score =  556 bits (1432), Expect = e-162
 Identities = 301/554 (54%), Positives = 384/554 (69%), Gaps = 14/554 (2%)

Query: 22  LHPTLARILSARGVREPAELATELPGLAPPAAMKGIDHAATYLADAIAAGRRLLIVADYD 81
           L P L R+ +ARGV+  AEL   L  L P   +KGI+     L +AI   +R+LIV D+D
Sbjct: 18  LPPLLTRLYAARGVQSEAELDKSLARLLPYQQLKGIEAGVDLLVEAIDQRQRILIVGDFD 77

Query: 82  CDGATACAVGVRGLRMLGA-RIDYIVPNRFEYGYGLTPEIVALAARQQPDVIVTVDNGIA 140
            DGATA  VGV GLR+LGA  +DY+VPNRFEYGYGLTPEIV +A ++QP +++TVDNGI+
Sbjct: 78  ADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITVDNGIS 137

Query: 141 SVDGVAAANALGIDVVVTDHHLPGDQLPDAAVIVNPNQPGCEFPSKNLAGVGVMFYVLLA 200
           SVDGVAAA A G+ V+VTDHHLPG+QLPDA  I+NPNQPGC FPSK+LAGVGV+FYVL+A
Sbjct: 138 SVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCSFPSKSLAGVGVIFYVLMA 197

Query: 201 LRAELRRRGVFDAQTQPRLDTLLDLVALGTVADVVKLDSNNRILVAQGLKRMRAGRMHAG 260
           LRA LR  G ++AQ QP +  LLDLVALG+VADVV LD+NNRILV QGL+R+RAGR   G
Sbjct: 198 LRARLRSLGRYEAQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRARPG 257

Query: 261 VAALFRAAGREATRANTFDLGFGVGPRLNAAGRLADMSLGIECLLTDDANRAWEIAQELD 320
           + A+   A R+  R  + DLGF +GPRLNAAGRL DMSLGIECLL +DA  A ++AQ+LD
Sbjct: 258 LKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALAQDMAQQLD 317

Query: 321 GMNRERRDIEAGMQQEAL-QILEGPLGALDPAARFTVSVFNDTWHQGVIGIVASRLKEKY 379
            +N++R+ IE GMQ+EAL Q+ + P+ ++     + + +F+  WHQGVIGI+ASRLKE+Y
Sbjct: 318 DLNQDRKSIEQGMQREALAQLKDLPVESMP----YGLCLFDADWHQGVIGILASRLKERY 373

Query: 380 HRPTITFAPGDEDTIKGSGRSIPGFHLRDALDLVSKRHPGLLKKFGGHAMAAGLTLGADS 439
           HRPTI FA   +  +KGS RS+PGFH+RDALD V+ RHP L+ KFGGHAMAAGL+L   +
Sbjct: 374 HRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSLPEAN 433

Query: 440 FGQFMEAFEAVGREWLSDEQLARVIETDGDIEDACFSPEFVSLLEQQ-VWGQGFPAPTFC 498
           F  F EAF+   R  L +E L   + +DG +    F  +    L     WGQ FP P F 
Sbjct: 434 FSAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPLFH 493

Query: 499 GEFDVLRQSVLKGKHLKLQLGR--GSQRFDAIWFNHADSLGASALV-----AYRLDNNTF 551
           G F ++ Q V+  +HLK+ L    GS R D I F     +  +  V     AY+LD N F
Sbjct: 494 GVFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGIDREVWPNPTVRWVELAYKLDVNEF 553

Query: 552 NGITRVQMVIEHAQ 565
            G   VQ++I H +
Sbjct: 554 RGNESVQLMIAHME 567