Pairwise Alignments

Query, 565 a.a., single-stranded DNA exonuclease from Cupriavidus basilensis FW507-4G11

Subject, 587 a.a., single-stranded-DNA-specific exonuclease RecJ from Pectobacterium carotovorum WPP14

 Score =  471 bits (1213), Expect = e-137
 Identities = 267/564 (47%), Positives = 354/564 (62%), Gaps = 29/564 (5%)

Query: 24  PTLARILSARGVREPAELATELPGLAPPAAMKGIDHAATYLADAIAAGRRLLIVADYDCD 83
           P L R+ + RGV+   EL   L GL     + GID A   L   +A  R ++IV D+D D
Sbjct: 24  PLLRRLYAQRGVKGAQELERSLSGLLNYRLLSGIDKAIDLLQHTLAEKRCIVIVGDFDAD 83

Query: 84  GATACAVGVRGLRMLGA-RIDYIVPNRFEYGYGLTPEIVALAARQQPDVIVTVDNGIASV 142
           GAT+ A+ V  LR +G   + Y+VPNRFE GYGL+PE+VA AA    +VIVTVDNGI+S 
Sbjct: 84  GATSTALTVLALRSMGGVNVKYLVPNRFENGYGLSPEVVAQAAALGAEVIVTVDNGISSH 143

Query: 143 DGVAAANALGIDVVVTDHHLPGDQLPDAAVIVNPNQPGCEFPSKNLAGVGVMFYVLLALR 202
            GV  A+  GI V+VTDHHLPG+ LP A  ++NPN P C+FPSK LAGVGV FY+++AL 
Sbjct: 144 AGVEDAHRRGIAVLVTDHHLPGEILPAADAMINPNLPDCQFPSKALAGVGVAFYLMMALF 203

Query: 203 AELRRRGVF-------DAQTQPRLDTLLDLVALGTVADVVKLDSNNRILVAQGLKRMRAG 255
             LR    F           +P L  LLDLVALGTVADVV LD+NNRILVAQGL R+RAG
Sbjct: 204 VRLRDSDWFTQPFFTQQGLAKPNLTELLDLVALGTVADVVPLDANNRILVAQGLNRIRAG 263

Query: 256 RMHAGVAALFRAAGREATRANTFDLGFGVGPRLNAAGRLADMSLGIECLLTDDANRAWEI 315
               G+ AL   A R+A++  + DLGF +GPRLNAAGRL DM++G+E LL++D  +A  +
Sbjct: 264 ECRPGIRALLEVANRDASQLVSSDLGFAIGPRLNAAGRLDDMTVGVELLLSNDITQARML 323

Query: 316 AQELDGMNRERRDIEAGMQQEALQILEGPLGALDPAARFTVSVFNDTWHQGVIGIVASRL 375
           A +LD +N++RR+IE GMQ EAL++ E  L        + +++++  WHQGV+GI+ASR+
Sbjct: 324 ANDLDALNQDRREIEQGMQVEALRLCES-LERTRTELPYGLAMYHPEWHQGVVGILASRI 382

Query: 376 KEKYHRPTITFAPGDEDTIKGSGRSIPGFHLRDALDLVSKRHPGLLKKFGGHAMAAGLTL 435
           KE++HRP I FAP  +  +KGSGRSI G HLRDAL+ +   +PG++ KFGGHAMAAGL+L
Sbjct: 383 KERFHRPVIAFAPAGDGMLKGSGRSISGLHLRDALERLDTLYPGMMDKFGGHAMAAGLSL 442

Query: 436 GADSFGQFMEAFEAVGREWLSDEQLARVIETDGDIEDACFSPEFVSLLEQQV------WG 489
             D F  F + F  +  EWL   QL  V+ +DG++      PE   L   ++      WG
Sbjct: 443 HEDRFDDFRQRFGELVGEWLDPSQLEGVVWSDGELA----LPELDLLSTAEMLRYAGPWG 498

Query: 490 QGFPAPTFCGEFDVLRQSVLKGKHLKLQL----GRGS-QRFDAIWFNHADSLGASALV-- 542
           Q FP PTF G F +L+  +LK +HLK         G+    D I FN   ++     +  
Sbjct: 499 QAFPEPTFDGCFRILQPRLLKERHLKAMFEPIGATGAVPLLDGIAFNVDTTIWPDPSIKE 558

Query: 543 ---AYRLDNNTFNGITRVQMVIEH 563
               YRLD N F G   VQ++I+H
Sbjct: 559 VEMVYRLDINEFRGKRSVQLMIQH 582