Pairwise Alignments

Query, 565 a.a., single-stranded DNA exonuclease from Cupriavidus basilensis FW507-4G11

Subject, 602 a.a., single-stranded-DNA-specific exonuclease from Agrobacterium fabrum C58

 Score =  257 bits (657), Expect = 8e-73
 Identities = 200/552 (36%), Positives = 277/552 (50%), Gaps = 27/552 (4%)

Query: 26  LARILSARGVREPAELATELP---GLAP-PAAMKGIDHAATYLADAIAAGRRLLIVADYD 81
           +AR+L+ RGV     LA   P    L P P  +   + AA  L  AI  G ++ I  DYD
Sbjct: 51  IARVLAGRGVGVDDALAFLDPTIRSLMPDPHMLTDCEKAAERLVRAIETGEKVAIFGDYD 110

Query: 82  CDGATACAVGVRGLRMLGARIDYIVPNRFEYGYGLTPEIVALAARQQPDVIVTVDNGIAS 141
            DGA + A+  R L   G   +  +P+R   GYG  P  +   A     +IVTVD G  S
Sbjct: 111 VDGAASSALTYRFLAHFGLTPEIYIPDRIFEGYGPNPAAMQQLAANGATLIVTVDCGSTS 170

Query: 142 VDGVAAANALGIDVVVTDHHLPGDQLPDAAVIVNPNQPGCEFPSKNLAGVGVMFYVLLAL 201
            + + AA   G DVVV DHH  G +LP A  +VNPN+        +L   GV+F V++A 
Sbjct: 171 HESLQAAKDAGTDVVVIDHHQVGTELPPAVALVNPNREDDLSGQGHLCAAGVVFLVMVAT 230

Query: 202 RAELRRRGVFDAQTQPRLDTLLDLVALGTVADVVKLDSNNRILVAQGLKRMRAGRMHAGV 261
              L+ R    A T   L +LLD+VAL TV DVV L   NR  V +GL   R    +AG+
Sbjct: 231 LRLLKDRRNRQAFTLDLL-SLLDIVALATVCDVVPLKGLNRAYVVKGLIAAR-HMNNAGL 288

Query: 262 AALFRAAGREATRANTFDLGFGVGPRLNAAGRLADMSLGIECLLTDDANRAWEIAQELDG 321
           AALF+ AG        +  GF +GPR+NA GR+ D +LG   L  DD   A  IA++LD 
Sbjct: 289 AALFKKAGLGGP-VTPYHFGFLIGPRINAGGRIGDAALGSRLLTIDDTTEAEVIAEKLDE 347

Query: 322 MNRERRDIEAGMQQEALQILEGPLGALDPAARFTVSVFNDTWHQGVIGIVASRLKEKYHR 381
           +NRER+ +EA M  EA        G  D +    +    + WH G++G++ASRLK+++ R
Sbjct: 348 LNRERQAMEAAMLAEAEAEALYEYG--DGSGAGVIVTARENWHPGIVGLLASRLKDRFRR 405

Query: 382 P--TITFAPGDEDTIKGSGRSIPGFHLRDALDLVSKRHPGLLKKFGGHAMAAGLTLGADS 439
           P   I F P  + T  GSGRSI GF +   +    +   GLL K GGHAMAAGLT+   +
Sbjct: 406 PAFAIAFDPSGKGT--GSGRSINGFDMGRMVRAAVE--TGLLVKGGGHAMAAGLTVERAN 461

Query: 440 FGQFMEAFEAVGREWLSDEQLARVIETDGDIEDACFSPEFVSLLEQQ-VWGQGFPAPTFC 498
            G+    FE    + +++   + V++ DG I  +  + + V  LEQ   +G G   P F 
Sbjct: 462 LGKLRTFFEEAAAKTVNELVESSVLKIDGAIGASGATLQLVDQLEQAGPYGSGHSQPIFA 521

Query: 499 GEFDVLRQSVLKG-KHLKLQL-GRGSQRFDAIWFNHAD---------SLGASALVAYRLD 547
                LR   L G  H+K+ L      R D I F  A+         + G +  VA  + 
Sbjct: 522 VPAHRLRDVRLVGTAHVKITLEAMDGSRLDGIAFRAAEAPLGQMLLNARGRNIHVAGTVG 581

Query: 548 NNTFNGITRVQM 559
            + + G  RVQ+
Sbjct: 582 ADLWQGQRRVQL 593