Pairwise Alignments

Query, 306 a.a., recombinase XerD from Cupriavidus basilensis FW507-4G11

Subject, 298 a.a., site-specific tyrosine recombinase from Escherichia coli BL21

 Score =  306 bits (784), Expect = 4e-88
 Identities = 167/296 (56%), Positives = 202/296 (68%), Gaps = 4/296 (1%)

Query: 12  DLALVDRFCDALWLEDGLAQNTIDAYRRDLALLSRWLHASGTCALLAVDDTALNGYFASR 71
           DLA +++F DALWLE  LA+NT++AYRRDL+++  WLH  G     A  D  L    A R
Sbjct: 4   DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDD-LQALLAER 62

Query: 72  -HLATRASSANRRLTVFKRFFQWALREHMITADPCLLLRPAKQPPRFPKTLTEAQVEALL 130
                +A+S+ R L+  +R FQ+  RE     DP   L   K P R PK L+EAQVE LL
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 131 ETPDTATPLGLRDRTMLELMYASGLRVSELTQMKTIEISLNEGVARVVGGKGNKERLVPF 190
           + P    PL LRD+ MLE++YA+GLRVSEL  +   +ISL +GV RV+G KGNKERLVP 
Sbjct: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG-KGNKERLVPL 181

Query: 191 GTEAGDWLRRYLAEGRPALLGERACEALFVTQRGEGMTRQAFWHLIKRHAREAEIYAP-L 249
           G EA  WL  YL  GRP LL   + + LF +QR + MTRQ FWH IK +A  A I +  L
Sbjct: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241

Query: 250 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQHHHPR 305
           SPH LRHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERLR+LHQ HHPR
Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297