Pairwise Alignments

Query, 562 a.a., RNA helicase from Cupriavidus basilensis FW507-4G11

Subject, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  520 bits (1339), Expect = e-152
 Identities = 302/582 (51%), Positives = 367/582 (63%), Gaps = 49/582 (8%)

Query: 1   MSFSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
           MSF+ LGLS+ L+RA+   GYT PTP+Q +AIPA+L+G DL+  AQTGTGKT GF LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  Q-LLSESSAGREPARGQRLPVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGI 119
           + L       +    G R P R LVLTPTRELAAQV +S + Y + LK  S  +FGGVG+
Sbjct: 61  ERLFPNGHPDKSQRHGPRQP-RVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGM 119

Query: 120 NPQIEQLKRGVDIVVATPGRLLDHLSQRTIDLAHVEMLVLDEADRMLDMGFIHDIRKILN 179
           NPQ++ + RGVD++VA PGRLLD   Q ++DL+HVE+LVLDEADRMLDMGF+HD++K+L 
Sbjct: 120 NPQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLA 179

Query: 180 VLPPKRQNLLFSATFSDEIRGLADRLLDNPASIEVARRNTTAETVAQRVYPVDRERKREL 239
            LP KRQNLLFSATFS +I  LA +LL NP  IEV   NTT E + QRV+ +    KR L
Sbjct: 180 RLPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRAL 239

Query: 240 LAHLVRENDWHQVLVFTRTKHGANRLAEQLDKDGLSALAIHGNKSQSARTRALTEFKAGT 299
           LAHL+    W QVLVFTRTKHGANRLAE LDK GL+A+AIHGNKSQ+ART+AL +FKAG+
Sbjct: 240 LAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGS 299

Query: 300 LRLLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEIS 359
           +R+LVATDIAARG+DIDQLPHVVN++LPNV EDYVHRIGRTGRAG  GEAISLV  DE  
Sbjct: 300 VRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359

Query: 360 LMRDIERLIKRQIEQTILPGFEVDPSIPAEP-------IQKGRQARG-QGQG-NGGGRGR 410
           L++ IER+ K++I    L GF+       +P       ++  R  RG +G G NGGG G 
Sbjct: 360 LLKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGG 419

Query: 411 GQAPAG--------GQPRGRAPAADAGERQQRPARAPQGRGQAPAAADGQGQ-------- 454
           G+   G           RG  PA +   R+  PAR  +   Q P AA  +          
Sbjct: 420 GRRDKGKDKGKEKSASGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDDV 479

Query: 455 ----RRAPQAPGQRPAQGSGR----PA-SAGQGNPRNGQANGNRTGEANGNRAAGNGNGN 505
                R    P  +PAQG GR    PA  AG G PR GQ  G   G  NG R     N +
Sbjct: 480 DNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAGAPRGGQPQG---GRQNGPR-----NSS 531

Query: 506 GNGNGNGNRDRNGDVNGNRAGVNTHAAQPRTGQDPARGRRPA 547
           G   G     RNG  NG          Q R     +  RRPA
Sbjct: 532 GGTTGTPPAKRNGPRNG-----APRDGQARREDSRSNNRRPA 568