Pairwise Alignments

Query, 562 a.a., RNA helicase from Cupriavidus basilensis FW507-4G11

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  506 bits (1302), Expect = e-147
 Identities = 296/581 (50%), Positives = 363/581 (62%), Gaps = 31/581 (5%)

Query: 1   MSFSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
           MSF+ LGLS+ L+RA+   GYT PTP+Q +AIPA+L+G DL+  AQTGTGKT GF LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  Q-LLSESSAGREPARGQRLPVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGI 119
           + L       +    G R P R LVLTPTRELAAQV +S + Y + L L S  +FGGVG+
Sbjct: 61  ERLFPAGHPDKSQRHGPRQP-RVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGM 119

Query: 120 NPQIEQLKRGVDIVVATPGRLLDHLSQRTIDLAHVEMLVLDEADRMLDMGFIHDIRKILN 179
           NPQI+ + +GVD++VA PGRLLD   Q  +DLAHVE+LVLDEADRMLDMGFIHD++K+L 
Sbjct: 120 NPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLA 179

Query: 180 VLPPKRQNLLFSATFSDEIRGLADRLLDNPASIEVARRNTTAETVAQRVYPVDRERKREL 239
            LP KRQNLLFSATFS +I  LAD+LL NP  IEV   NTT E + QRVY +    KR L
Sbjct: 180 RLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRAL 239

Query: 240 LAHLVRENDWHQVLVFTRTKHGANRLAEQLDKDGLSALAIHGNKSQSARTRALTEFKAGT 299
           LAHL+    W QVLVFTRTKHGANRLAE L+K GL+A AIHGNKSQ+ART+AL +FKA +
Sbjct: 240 LAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANS 299

Query: 300 LRLLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEIS 359
           +R+LVATDIAARG+DIDQLPHVVN++LPNV EDYVHRIGRTGRAG  GEAISLV  DE  
Sbjct: 300 VRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359

Query: 360 LMRDIERLIKRQIEQTILPGFEVDPSIPAEPIQKGR-QARGQGQGNGGGRGRGQAPAGGQ 418
           L++ IER+ K++I    L GF+       +P  + R Q  G+G  N   RG G     G 
Sbjct: 360 LLKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDTNGG 419

Query: 419 PRGRAPAADAGERQQRPARAPQGRGQAPAAADGQGQRRAPQAPGQRPAQGSGR--PASAG 476
            + +    D G+ +Q+ A  P  + +   + D Q Q R P+    RP Q S    P    
Sbjct: 420 RKDK--GKDKGKARQQAAAKPDDKEK---SGDKQ-QPRKPRDKKSRPQQASNNSVPKPPA 473

Query: 477 QGNPRNGQAN-----GNRT-------GEANGNRAAGNGNGNGNGNGNGNRDRNGDVNGNR 524
             +P     +     GNR        G+  G      G G G G GNG R   G     R
Sbjct: 474 DRDPEEFLDDELDNFGNRADYVSPYQGKNQGRNRRPGGAGQGQGQGNGQRSNAGGQGQAR 533

Query: 525 AGVNTHAAQPRTG---QDPARGRRPAPQAALLGGQRAKPTR 562
            G      QPR+G   + P R           GG R +P R
Sbjct: 534 NG-----GQPRSGGGEKRPPRANNGGGARRDGGGGRGRPAR 569



 Score = 42.7 bits (99), Expect = 4e-08
 Identities = 40/129 (31%), Positives = 53/129 (41%), Gaps = 29/129 (22%)

Query: 362 RDIERLIKRQIEQTILPGFEVDPSIPAEPIQKGRQAR----GQGQGNGGGR-----GRGQ 412
           RD E  +  +++     G   D   P +   +GR  R    GQGQG G G+     G+GQ
Sbjct: 475 RDPEEFLDDELDNF---GNRADYVSPYQGKNQGRNRRPGGAGQGQGQGNGQRSNAGGQGQ 531

Query: 413 APAGGQPRGRAPAADAGERQQRPARAPQGRGQAPAAADGQGQRRAPQAPGQRPAQGSGRP 472
           A  GGQPR       +G  ++RP          P A +G G RR       RPA+     
Sbjct: 532 ARNGGQPR-------SGGGEKRP----------PRANNGGGARRDGGGGRGRPARDDAAR 574

Query: 473 ASAGQGNPR 481
                 NPR
Sbjct: 575 QEPAVRNPR 583