Pairwise Alignments

Query, 562 a.a., RNA helicase from Cupriavidus basilensis FW507-4G11

Subject, 434 a.a., Superfamily II DNA and RNA helicases from Kangiella aquimarina DSM 16071

 Score =  436 bits (1122), Expect = e-127
 Identities = 228/436 (52%), Positives = 301/436 (69%), Gaps = 12/436 (2%)

Query: 1   MSFSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
           M FS+L L   L+ A+ + GYTTP+PIQ + IP IL G D++A AQTGTGKTAGF LP+L
Sbjct: 1   MPFSKLDLIQPLLDALHKSGYTTPSPIQQKVIPLILNGRDIMAAAQTGTGKTAGFALPVL 60

Query: 61  QLLSESSAGREPARGQRLPVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGIN 120
           Q LSE        R      R L+LTPTRELA QV +SV+ Y   L L+S+V++GGV IN
Sbjct: 61  QRLSEGK------RVSANSARCLILTPTRELAEQVHQSVQKYAANLSLKSVVVYGGVKIN 114

Query: 121 PQIEQLKRGVDIVVATPGRLLDHLSQRTIDLAHVEMLVLDEADRMLDMGFIHDIRKILNV 180
           PQ+ +L+RG D++VATPGRLLD + Q  +    +E LVLDEADRMLDMGF+  I++I+  
Sbjct: 115 PQMLKLRRGTDVLVATPGRLLDLMEQNAVSFTDLEFLVLDEADRMLDMGFLPSIKRIIGK 174

Query: 181 LPPKRQNLLFSATFSDEIRGLADRLLDNPASIEVARRNTTAETVAQRVYPVDRERKRELL 240
           LP  RQ LLFSATFS+ I+ ++ + L NPA +E  + NTTA TV Q +YPVD+++K  LL
Sbjct: 175 LPKNRQTLLFSATFSESIKAISQQFLTNPALVETGQTNTTATTVKQWIYPVDKKQKPALL 234

Query: 241 AHLVRENDWHQVLVFTRTKHGANRLAEQLDKDGLSALAIHGNKSQSARTRALTEFKAGTL 300
           ++L+  + W Q+LVF RT+ GANRL+  LDK G+ A AIHG KSQ AR RAL EFK+G +
Sbjct: 235 SYLIGHHRWDQLLVFVRTRRGANRLSVDLDKRGIKATAIHGGKSQGARNRALAEFKSGEV 294

Query: 301 RLLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEISL 360
            +LVATD+AARG+DI+Q+P V+NYDLPNV EDYVHRIGRTGRAG +G AISLV  DE+  
Sbjct: 295 TVLVATDVAARGLDIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEKGSAISLVSADEVDD 354

Query: 361 MRDIERLIKRQIEQTILPGFEVDPSIPAEPIQKGRQAR------GQGQGNGGGRGRGQAP 414
           +R I+ LI++Q+E+ I  GFE   S+P  P++  R+ +       + Q N   +  G + 
Sbjct: 355 LRAIQDLIRQQLERRIADGFEPQHSLPETPLKSPRKKKPHKKKLAKAQLNQANKKSGVSQ 414

Query: 415 AGGQPRGRAPAADAGE 430
              + R   P   AG+
Sbjct: 415 NKNKRRKPKPTNKAGK 430