Pairwise Alignments
Query, 1940 a.a., excinuclease ABC subunit A from Cupriavidus basilensis FW507-4G11
Subject, 944 a.a., Excinuclease ABC subunit A from Pseudomonas fluorescens GW456-L13
Score = 624 bits (1608), Expect = 0.0
Identities = 400/1012 (39%), Positives = 559/1012 (55%), Gaps = 103/1012 (10%)
Query: 6 IRIRGARQHNLKNLDLDLHTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
I IRGAR HNLKN+DL L ++ V+TG SGSGKSSL FDTLYAEGQRRYVE+ SAYARQ
Sbjct: 4 ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
Query: 66 FLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAELFDRQT 125
FL M++P VD ++G+ PAI+I+Q + + RSTVGT+TE+ D+L+LLYAR
Sbjct: 64 FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVG------I 117
Query: 126 AQPVRHDSP---ETIYAELQARAAQGD-PRLVVTFPVELPETTTDAEIEQWLSVSGYTRV 181
+ HD P +T+ + A+ + +L++ PV + + L G+ R
Sbjct: 118 PRCPDHDIPLEAQTVSQMVDLVLAEPEGSKLMLLAPVIRERKGEHLSVFEELRAQGFVRA 177
Query: 182 QAQ-RVVASPTGP------RKVLDVVADRFRLGNTEKVRVLEAIEASLKRGSGRVNVYVT 234
+ ++ P + +DVV DRF++ + R+ E+ E +LK G V
Sbjct: 178 RINGKLYELDEAPKLDKQKKHTIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPM 237
Query: 235 DAANEGAQAQVWRFSTGLHSPESDIRYADPQPALFSFNSAYGACETCRGFGRVIGVDLGL 294
D +E + + FS P ++ +P LFSFN+ GAC TC G G D+
Sbjct: 238 D--DEPGEEMI--FSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKR 293
Query: 295 VIPDERKTLRGGAIKPMQTPAWKECQ----DDLMRYAAKAGIPRDVAWSSLTPAERAWVI 350
++ E TL GAI+ W L A+ +V ++ L ++ +++
Sbjct: 294 LVNGE-LTLAEGAIR-----GWDRRNVYYFQMLGSLASHYKFSLEVPFNELPADQQKFIL 347
Query: 351 DGSPDWNGKW---NTHWYGVKRFFDY------LESK---AYKMHIRVLLSKYRSYTPCET 398
GS N + N VKR + LE + +R L+K+ S C
Sbjct: 348 HGSGSQNVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSTQSCPD 407
Query: 399 CGGARLKTEALLWRLGSKPGADAVCAPQKRFAPRGVDWDRTQLEALPGLTVHDLMLMPIE 458
C G RL+ EA +G K LP +T +PI
Sbjct: 408 CRGTRLRREARHVWVGEK--------------------------TLPAVT-----NLPIG 436
Query: 459 RIRKFFDELTLPSLMLDDALKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEVQRIN 518
+F L L + A K +L E+R RL++L +VGL YL+LDR + TLSGGE QRI
Sbjct: 437 DASDYFGGLKLTGRRGEIADK-ILKEIRERLQFLVNVGLDYLSLDRSADTLSGGEAQRIR 495
Query: 519 LTTALGTSLVKTLFVLDEPSIGLHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSVMLAADR 578
L + +G LV L++LDEPSIGLH RD +R++ + LRD GNT++VVEHD + AD
Sbjct: 496 LASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADY 555
Query: 579 LIDMGPGPGERGGNIIFDGTPADIRG-SGTLTGEYLAGHRQVTDLSRWTPRAVDAATPRI 637
++D+GPG G GG+I+ +GTPA++ +LTG+YL+G ++ ++ TPR +
Sbjct: 556 VVDIGPGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLSGRVKIEVPAKRTPRNKKLT---L 612
Query: 638 VLEGASEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLLQDVLYPAMARQFGKSTDAPGAFR 697
L+GA +NLR+V +EIP+ L CVTGVSGSGKSTL+ + L+P A +T A
Sbjct: 613 SLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSATALNGATTLEAAVH 672
Query: 698 -SLTGAEQVADVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAKAPMALQRSYTAGMFSF 756
S+ G E + VV +DQSPIG+T RSNPA+Y G F IR+LFA P + R Y G FSF
Sbjct: 673 DSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPESRSRGYGPGRFSF 732
Query: 757 NSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGRRYRAEILEVKIERALPGQPPRALS 816
N GRC C G G VEM FL D+Y+ C C +RY E LE+K + S
Sbjct: 733 NVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKY---------KGKS 783
Query: 817 VADVLELTVSEAVAYFAGDAAVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGYL 876
+ + LE+T+ EA +F A+ R LQ ++DVGL Y+KLGQ TLSGGEAQR+KL+ L
Sbjct: 784 IHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSREL 843
Query: 877 AETAQASNTRVKPMPYECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLD 936
++ L++ DEPTTGLHF DI +L+ +L D G++++VIEHNLD
Sbjct: 844 SKRDTGKT-----------LYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLD 892
Query: 937 VVRAADWIIDLGPEGGDAGGEVLCVGTPEDVKRCAHSHTG---KALLQYDRA 985
V++ ADW++DLGPEGG GG+++ VGTPE+V SHTG K LL+ DRA
Sbjct: 893 VIKTADWLVDLGPEGGSKGGQIIAVGTPEEVSEMKQSHTGYYLKPLLERDRA 944
Score = 515 bits (1327), Expect = e-150
Identities = 289/613 (47%), Positives = 376/613 (61%), Gaps = 53/613 (8%)
Query: 1329 DNRGREQTLPSEQQEPDDVADTP-CADCGGTRLNPVARAVTFDTHPIVAVAQWTVSDTHR 1387
+ R RE S ++E T C DC GTRL AR V + AV + D
Sbjct: 381 ERRYRETESASVREELAKFLSTQSCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDASD 440
Query: 1388 WVQGLHLAGREGEIARDVVSEIRSRLQFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQL 1447
+ GL L GR GEIA ++ EIR RLQFL VGL YLSLDR+A +LSGGEAQRIRLA+Q+
Sbjct: 441 YFGGLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLSLDRSADTLSGGEAQRIRLASQI 500
Query: 1448 GSNLQGVCYVLDEPTIGLHPRDNQILLDALRKLGEKGNTLVVVEHDEDTIRCADHIIDIG 1507
G+ L GV Y+LDEP+IGLH RDN LL L+ L + GNT++VVEHDED IR AD+++DIG
Sbjct: 501 GAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIG 560
Query: 1508 PGAGKRGGTLVAQGGVAALSASADSLTGQFLAQPILHPLQPRREVTPAGKNNEAVPERWL 1567
PGAG GG +VA+G A + A DSLTG++L+ + + +R TP K + L
Sbjct: 561 PGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLSGRVKIEVPAKR--TPRNK------KLTL 612
Query: 1568 TVHNATKHNLRNVTASIPLARLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSPATR 1627
++ A +NLRNV IP+ L +TGVSGSGKSTL + L A+ + A
Sbjct: 613 SLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSATALNGATTLEAAVH 672
Query: 1628 RARKAAGSEAPARSQATARTEPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGKTPR 1687
+SI G E +D+V+++DQ+PIG+TPR
Sbjct: 673 -----------------------------------DSIKGLEHLDKVVDIDQSPIGRTPR 697
Query: 1688 SCPATYIGVWDTIRKLFAQTLEAKARGYSASRFSFNTGDGRCPACEGQGVRTIGMSFLPD 1747
S PATY G++ IR+LFA E+++RGY RFSFN GRC AC+G G+ + M FLPD
Sbjct: 698 SNPATYTGLFTPIRELFAGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPD 757
Query: 1748 VKVHCDVCHGQRFNPETLAVTWRGKNIGDVLTMEIDEAVEFFSAMSNIAHPLQLMKDVGL 1807
+ V CDVC +R+N ETL + ++GK+I + L M I+EA FF A+ +A LQ + DVGL
Sbjct: 758 IYVPCDVCKSKRYNRETLEIKYKGKSIHETLEMTIEEARVFFDAVPALARKLQTLMDVGL 817
Query: 1808 GYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQQAPHTLYVLDEPTVGLHMADVA 1867
Y+ LGQ + TLSGGEAQR+KL ELSK + TLY+LDEPT GLH AD+
Sbjct: 818 SYIKLGQSATTLSGGEAQRVKLSRELSK---------RDTGKTLYILDEPTTGLHFADIQ 868
Query: 1868 KLIRVLHRLADGGHSVVVIEHDLDVIAEADWILDLGPEGGVAGGGIVAATDPEGLVRVRA 1927
+L+ VLHRL D G++VVVIEH+LDVI ADW++DLGPEGG GG I+A PE + ++
Sbjct: 869 QLLDVLHRLRDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIAVGTPEEVSEMKQ 928
Query: 1928 SHTGAALAPVLAR 1940
SHTG L P+L R
Sbjct: 929 SHTGYYLKPLLER 941
Score = 210 bits (534), Expect = 8e-58
Identities = 110/296 (37%), Positives = 177/296 (59%), Gaps = 12/296 (4%)
Query: 1016 DVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESLNAYA 1075
D + I A HNLK +++ +P K VITG+SGSGKS+LAFD L+ EGQRRY+ESL+AYA
Sbjct: 2 DKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
Query: 1076 RSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLMYVKLGIQHCI 1135
R + +P+VD + G+ P ++IEQ+ + +STV T +E++ +LRL+Y ++GI C
Sbjct: 62 RQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRCP 121
Query: 1136 HDGTPVTSQSPESIAAQLLRDYKGQHVGLLAPLVVSRKGVYTDLAKWAKARGNTHLRVDG 1195
P+ +Q+ + +L + +G + LLAP++ RKG + + + +A+G R++G
Sbjct: 122 DHDIPLEAQTVSQMVDLVLAEPEGSKLMLLAPVIRERKGEHLSVFEELRAQGFVRARING 181
Query: 1196 EFLPVDPWPRLDRFREHTIELPVGDIIVSADNEAALRALLGQALEAGKGVMHLLAPLDGL 1255
+ +D P+LD+ ++HTI++ V V AD + L AL+ G+ L+AP+D
Sbjct: 182 KLYELDEAPKLDKQKKHTIDVVVDRFKVRADLQQRLAESFETALKLADGIA-LVAPMDD- 239
Query: 1256 QHAMGNGGTARVGSTTVFSTKRACPVCSTSYPELDPRLFSYNSKHGWCTSCVGTGL 1311
G +FS + ACP+C + EL+P+LFS+N+ G C +C G G+
Sbjct: 240 ----------EPGEEMIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGV 285
Score = 133 bits (335), Expect = 1e-34
Identities = 97/290 (33%), Positives = 143/290 (49%), Gaps = 55/290 (18%)
Query: 786 CPDCDGRRYRAEILEVKI-ERALPGQPPRALSVADVLELTVSEAVAYFAG---------- 834
CPDC G R R E V + E+ LP V L + +A YF G
Sbjct: 405 CPDCRGTRLRREARHVWVGEKTLPA----------VTNLPIGDASDYFGGLKLTGRRGEI 454
Query: 835 -DAAVLRV---LQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGYLAETAQASNTRVKPM 890
D + + LQ +V+VGL+Y+ L + TLSGGEAQR++LA +
Sbjct: 455 ADKILKEIRERLQFLVNVGLDYLSLDRSADTLSGGEAQRIRLASQIGAGLVGV------- 507
Query: 891 PYECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLDVVRAADWIIDLGPE 950
L++ DEP+ GLH D +L+ L D G+++IV+EH+ D +R AD+++D+GP
Sbjct: 508 -----LYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIGPG 562
Query: 951 GGDAGGEVLCVGTPEDVKRCAHSHTGKALLQYDRAVGHAFVAQDAGVPLQAALRAARARR 1010
G GG ++ GTP +V S TGK L G + VP + R +
Sbjct: 563 AGVHGGHIVAEGTPAEVMAHPDSLTGKYLS------GRVKIE----VPAKRTPRNKKLTL 612
Query: 1011 AIEGEDVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILF 1060
+++G A +NL+ ++++IP G +TGVSGSGKSTL + LF
Sbjct: 613 SLKG--------ARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLF 654
Score = 58.9 bits (141), Expect = 3e-12
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 636 RIVLEGASEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLLQDVLY-----------PAMAR 684
+I++ GA HNL+++ + +P +L+ +TG+SGSGKS+L D LY A AR
Sbjct: 3 KILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
Query: 685 QFGKSTDAPGAFRSLTGAEQVADVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAK 740
QF + P + E ++ + ++Q RS + +D +R L+A+
Sbjct: 63 QFLSMMEKP----DVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYAR 114
Score = 52.0 bits (123), Expect = 4e-10
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 29/140 (20%)
Query: 1567 LTVHNATKHNLRNVTASIPLARLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSPAT 1626
+ + A HNL+N+ ++P +L+ ITG+SGSGKS+LA D L A
Sbjct: 4 ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAE--------------- 48
Query: 1627 RRARKAAGSEAPARSQATARTEPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGKTP 1686
+ R A AR + +P + E + + ++Q P
Sbjct: 49 GQRRYVESLSAYARQFLSMMEKP--------------DVDTIEGLSPAISIEQKSTSHNP 94
Query: 1687 RSCPATYIGVWDTIRKLFAQ 1706
RS T ++D +R L+A+
Sbjct: 95 RSTVGTITEIYDYLRLLYAR 114
Score = 30.0 bits (66), Expect = 0.002
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 1720 FSFNTGDGRCPACEGQGVR 1738
FSFN G CP C+G GV+
Sbjct: 268 FSFNNPAGACPTCDGLGVK 286