Pairwise Alignments
Query, 1940 a.a., excinuclease ABC subunit A from Cupriavidus basilensis FW507-4G11
Subject, 1045 a.a., UvrABC system protein A from Xanthobacter sp. DMC5
Score = 659 bits (1700), Expect = 0.0
Identities = 412/1046 (39%), Positives = 571/1046 (54%), Gaps = 103/1046 (9%)
Query: 6 IRIRGARQHNLKNLDLDLHTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
+ +RGAR+HNLKN+DL++ + V TG SGSGKSSL FDT+YAEGQRRYVE+ SAYARQ
Sbjct: 28 LSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 87
Query: 66 FLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAELFDRQT 125
FL+ M +P VD++DG+ PAI+I+Q ++ RSTVGT+TE+ D+++LL+AR + T
Sbjct: 88 FLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARTGVPYSPAT 147
Query: 126 AQPVRHDSPETIYAELQARAAQGDPRLVVTFPVELPETTTDAEIEQWLSVSGYTRVQA-- 183
P+ + + A +G ++ V + E+ W+ G+ RV+
Sbjct: 148 GLPIESQTVSQMVDRTLA-LPEGTRLYLLAPVVRGRKGEYRKELADWMK-KGFQRVKVNG 205
Query: 184 --QRVVASPTGPRKV---LDVVADRFRLGNTEKVRVLEAIEASLKRGSGRVNVYVTDAAN 238
+ +P +K +DVV DR + R+ ++ E +L G D +
Sbjct: 206 AFHEIAEAPALDKKFKHDIDVVVDRIVVRADLAQRLADSFETALGLADGIAVAEFADEKD 265
Query: 239 EGAQAQVWRFSTGLHSPESDIRYADPQPALFSFNSAYGACETCRGFGRVIGVDLGLVIPD 298
E + FS P S + +P LFSFN+ +GAC C G G +D LV+PD
Sbjct: 266 EAGAPRRIIFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPACDGLGVEQTIDPDLVVPD 325
Query: 299 ERKTLRGGAIKP---MQTPAWKECQDDLMR-YAAKAGIPRDVAWSSLTPAERAWVIDGS- 353
+ ++L+ GAI P +P + + D L + Y K +P ++ L R ++ GS
Sbjct: 326 KARSLKQGAIAPWAKSTSPYYGQTLDALAKHYHFKLNVP----FADLPEQAREVLLFGSG 381
Query: 354 --------PDWNGKWNTH--WYGVKRFFDYLESKAYKMHIRVLLSKYRSYTPCETCGGAR 403
D + T + GV R D + R +SKY S PC+ C G R
Sbjct: 382 SEKITFHYDDGMRAYETSKTFEGVVRNLDRRWKETDSDWAREEISKYFSTVPCKVCNGYR 441
Query: 404 LKTEALLWRLGSKPGADAVCAPQKRFAPRGVDWDRTQLEALPGLTVHDLMLMPIERIRKF 463
LK EAL ++ G + ++ + + +
Sbjct: 442 LKPEALAVKIA-------------------------------GRHIGEIGELSVRAAAGW 470
Query: 464 FDELTLPSLMLDDALKL---LLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEVQRINLT 520
F+ +LP+ + D ++ +L E+R RL++L DVGL YLTL R S TLSGGE QRI L
Sbjct: 471 FE--SLPAQLTDKQNEIAGRILKEIRERLRFLLDVGLEYLTLARSSGTLSGGESQRIRLA 528
Query: 521 TALGTSLVKTLFVLDEPSIGLHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSVMLAADRLI 580
+ +G+ L L+VLDEPSIGLH RD R++ + LRD GNT++VVEHD +LAAD ++
Sbjct: 529 SQIGSGLTGVLYVLDEPSIGLHQRDNERLLGTLKHLRDLGNTVIVVEHDEDAILAADHVV 588
Query: 581 DMGPGPGERGGNIIFDGTPADIRGS-GTLTGEYLAGHRQVTDLSRWTPRAVDAATPRIVL 639
D+GPG G GG I+ GTPA+I + +LTG YL G V +R P + L
Sbjct: 589 DVGPGAGIHGGEIVAQGTPAEILANPASLTGRYLTGELSVGVPARRKPN----PKRMLKL 644
Query: 640 EGASEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLLQDVLYPAMARQFGKSTDAPGAFRSL 699
GA +NL++VT EIPL C+TGVSG GKSTLL D LY A+AR+ +++AP F L
Sbjct: 645 TGARGNNLKNVTAEIPLGLFTCITGVSGGGKSTLLIDTLYKAVARRLNGASEAPAPFDKL 704
Query: 700 TGAEQVADVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAKAPMALQRSYTAGMFSFNSG 759
G E + V+ +DQSPIG+T RSNPA+Y GAF IR+ FA P A R Y AG FSFN
Sbjct: 705 EGLEHLDKVIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPEAKARGYGAGRFSFNVK 764
Query: 760 DGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGRRYRAEILEVKIERALPGQPPRALSVAD 819
GRC C G G +EM FL DVY+ C C G+RY E LEV + S+AD
Sbjct: 765 GGRCEACQGDGVIKIEMHFLPDVYVTCDVCKGKRYNRETLEVTFKNK---------SIAD 815
Query: 820 VLELTVSEAVAYFAGDAAVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGYLAET 879
VL++TV E +F +V L+ + VGL+YVK+GQ TLSGGEAQR+KL+ L+
Sbjct: 816 VLDMTVEEGAQFFKAVPSVREKLETLHRVGLDYVKVGQQATTLSGGEAQRVKLSKELSRR 875
Query: 880 AQASNTRVKPMPYECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLDVVR 939
A L++ DEPTTGLHF D+ KL+ +L++ G+S++VIEHNL+V++
Sbjct: 876 ATGRT-----------LYILDEPTTGLHFHDVKKLLEVLHELVEQGNSVVVIEHNLEVIK 924
Query: 940 AADWIIDLGPEGGDAGGEVLCVGTPEDVKRCAHSHTGKALLQY--------DRAVGHAFV 991
ADWI+DLGPEGGD GGE++ GTPE V SHTG+ L + DR
Sbjct: 925 TADWILDLGPEGGDGGGEIVVAGTPETVAASKRSHTGRFLAEVLARRPFADDRKASAGTD 984
Query: 992 AQDAGVPLQAALRAARARRAIEGEDV 1017
A+ A AA R ARR + EDV
Sbjct: 985 AKPA-----AAGRGKAARRPV-AEDV 1004
Score = 512 bits (1318), Expect = e-148
Identities = 300/628 (47%), Positives = 381/628 (60%), Gaps = 57/628 (9%)
Query: 1316 EQRAAYDDTVMADDNRGREQTLPSEQQEPDDVADT-PCADCGGTRLNPVARAVTFDTHPI 1374
E ++ V D R +E ++E T PC C G RL P A AV I
Sbjct: 397 ETSKTFEGVVRNLDRRWKETDSDWAREEISKYFSTVPCKVCNGYRLKPEALAVKIAGRHI 456
Query: 1375 VAVAQWTVSDTHRWVQGL--HLAGREGEIARDVVSEIRSRLQFLEEVGLGYLSLDRAAPS 1432
+ + +V W + L L ++ EIA ++ EIR RL+FL +VGL YL+L R++ +
Sbjct: 457 GEIGELSVRAAAGWFESLPAQLTDKQNEIAGRILKEIRERLRFLLDVGLEYLTLARSSGT 516
Query: 1433 LSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNQILLDALRKLGEKGNTLVVVEH 1492
LSGGE+QRIRLA+Q+GS L GV YVLDEP+IGLH RDN+ LL L+ L + GNT++VVEH
Sbjct: 517 LSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNERLLGTLKHLRDLGNTVIVVEH 576
Query: 1493 DEDTIRCADHIIDIGPGAGKRGGTLVAQGGVAALSASADSLTGQFLAQPILHPLQPRREV 1552
DED I ADH++D+GPGAG GG +VAQG A + A+ SLTG++L + + RR+
Sbjct: 577 DEDAILAADHVVDVGPGAGIHGGEIVAQGTPAEILANPASLTGRYLTGELSVGVPARRKP 636
Query: 1553 TPAGKNNEAVPERWLTVHNATKHNLRNVTASIPLARLVAITGVSGSGKSTLARDVLMANL 1612
P +R L + A +NL+NVTA IPL ITGVSG GKSTL L+ L
Sbjct: 637 NP---------KRMLKLTGARGNNLKNVTAEIPLGLFTCITGVSGGGKSTL----LIDTL 683
Query: 1613 LDAVGRSVMSSPATRRARKAAGSEAPARSQATARTEPRRKLEVTHNWQGCESITGYESID 1672
AV R R SEAPA P KLE G E +D
Sbjct: 684 YKAVAR-----------RLNGASEAPA---------PFDKLE------------GLEHLD 711
Query: 1673 RVLEVDQTPIGKTPRSCPATYIGVWDTIRKLFAQTLEAKARGYSASRFSFNTGDGRCPAC 1732
+V+++DQ+PIG+TPRS PATY G + IR+ FA EAKARGY A RFSFN GRC AC
Sbjct: 712 KVIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPEAKARGYGAGRFSFNVKGGRCEAC 771
Query: 1733 EGQGVRTIGMSFLPDVKVHCDVCHGQRFNPETLAVTWRGKNIGDVLTMEIDEAVEFFSAM 1792
+G GV I M FLPDV V CDVC G+R+N ETL VT++ K+I DVL M ++E +FF A+
Sbjct: 772 QGDGVIKIEMHFLPDVYVTCDVCKGKRYNRETLEVTFKNKSIADVLDMTVEEGAQFFKAV 831
Query: 1793 SNIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQQAPHTLY 1852
++ L+ + VGL Y+ +GQ + TLSGGEAQR+KL ELS+ + TLY
Sbjct: 832 PSVREKLETLHRVGLDYVKVGQQATTLSGGEAQRVKLSKELSR---------RATGRTLY 882
Query: 1853 VLDEPTVGLHMADVAKLIRVLHRLADGGHSVVVIEHDLDVIAEADWILDLGPEGGVAGGG 1912
+LDEPT GLH DV KL+ VLH L + G+SVVVIEH+L+VI ADWILDLGPEGG GG
Sbjct: 883 ILDEPTTGLHFHDVKKLLEVLHELVEQGNSVVVIEHNLEVIKTADWILDLGPEGGDGGGE 942
Query: 1913 IVAATDPEGLVRVRASHTGAALAPVLAR 1940
IV A PE + + SHTG LA VLAR
Sbjct: 943 IVVAGTPETVAASKRSHTGRFLAEVLAR 970
Score = 200 bits (508), Expect = 1e-54
Identities = 121/339 (35%), Positives = 190/339 (56%), Gaps = 19/339 (5%)
Query: 998 PLQAALRAARARRAIEGEDVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFD 1057
P +A +R R A + + A EHNLK ++++IP V TG+SGSGKS+LAFD
Sbjct: 12 PAEAPVREVPRRDA----RTLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFD 67
Query: 1058 ILFHEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSE 1117
++ EGQRRY+ESL+AYAR ++ +P+VD + G+ P ++IEQ+ + +STV T +E
Sbjct: 68 TIYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTE 127
Query: 1118 VWHFLRLMYVKLGIQHCIHDGTPVTSQSPESIAAQLLRDYKGQHVGLLAPLVVSRKGVY- 1176
++ ++RL++ + G+ + G P+ SQ+ + + L +G + LLAP+V RKG Y
Sbjct: 128 IYDYMRLLWARTGVPYSPATGLPIESQTVSQMVDRTLALPEGTRLYLLAPVVRGRKGEYR 187
Query: 1177 TDLAKWAKARGNTHLRVDGEFLPVDPWPRLDRFREHTIELPVGDIIVSADNEAALRALLG 1236
+LA W K +G ++V+G F + P LD+ +H I++ V I+V AD L L
Sbjct: 188 KELADWMK-KGFQRVKVNGAFHEIAEAPALDKKFKHDIDVVVDRIVVRAD----LAQRLA 242
Query: 1237 QALEAGKGVMHLLAPLDGLQHAMGNGGTARVGSTTVFSTKRACPVCSTSYPELDPRLFSY 1296
+ E G+ +A + G R+ +FS K ACPV + PE++PRLFS+
Sbjct: 243 DSFETALGLADGIAVAEFADEKDEAGAPRRI----IFSEKFACPVSGFTIPEIEPRLFSF 298
Query: 1297 NSKHGWCTSCVGTGLTLTREQRAAYDDTVMADDNRGREQ 1335
N+ G C +C G G+ T + D V+ D R +Q
Sbjct: 299 NNPFGACPACDGLGVEQTID-----PDLVVPDKARSLKQ 332
Score = 137 bits (344), Expect = 1e-35
Identities = 101/297 (34%), Positives = 145/297 (48%), Gaps = 56/297 (18%)
Query: 786 CPDCDGRRYRAEILEVKIERALPGQPPRALSVADVLELTVSEAVAYFAGDAAVL------ 839
C C+G R + E L VKI + ++ EL+V A +F A L
Sbjct: 434 CKVCNGYRLKPEALAVKIA---------GRHIGEIGELSVRAAAGWFESLPAQLTDKQNE 484
Query: 840 ---RVLQPI-------VDVGLEYVKLGQPVPTLSGGEAQRLKLAGYLAETAQASNTRVKP 889
R+L+ I +DVGLEY+ L + TLSGGE+QR++LA +
Sbjct: 485 IAGRILKEIRERLRFLLDVGLEYLTLARSSGTLSGGESQRIRLASQIGSGLTGV------ 538
Query: 890 MPYECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLDVVRAADWIIDLGP 949
L++ DEP+ GLH D +L+ L D G+++IV+EH+ D + AAD ++D+GP
Sbjct: 539 ------LYVLDEPSIGLHQRDNERLLGTLKHLRDLGNTVIVVEHDEDAILAADHVVDVGP 592
Query: 950 EGGDAGGEVLCVGTPEDVKRCAHSHTGKALLQYDRAVGHAFVAQDAGVPLQAALRAARAR 1009
G GGE++ GTP ++ S TG+ L G V GVP AR
Sbjct: 593 GAGIHGGEIVAQGTPAEILANPASLTGRYL------TGELSV----GVP---------AR 633
Query: 1010 RAIEGEDVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRR 1066
R + ++++ A +NLK + +IP G F ITGVSG GKSTL D L+ RR
Sbjct: 634 RKPNPKRMLKLTGARGNNLKNVTAEIPLGLFTCITGVSGGGKSTLLIDTLYKAVARR 690
Score = 130 bits (326), Expect = 1e-33
Identities = 92/271 (33%), Positives = 129/271 (47%), Gaps = 43/271 (15%)
Query: 1294 FSYNSKHGWCTSCVGTGLTLTREQRAAYDDTVMADDNRGREQTLPSEQQEPDDVADTPCA 1353
FS+N K G C +C G G+ + E DV T C
Sbjct: 759 FSFNVKGGRCEACQGDGV-------------------------IKIEMHFLPDVYVT-CD 792
Query: 1354 DCGGTRLNPVARAVTFDTHPIVAVAQWTVSDTHRWVQGLHLAGREGEIARDVVSEIRSRL 1413
C G R N VTF I V TV EG V +R +L
Sbjct: 793 VCKGKRYNRETLEVTFKNKSIADVLDMTV--------------EEGAQFFKAVPSVREKL 838
Query: 1414 QFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQG-VCYVLDEPTIGLHPRDNQI 1472
+ L VGL Y+ + + A +LSGGEAQR++L+ +L G Y+LDEPT GLH D +
Sbjct: 839 ETLHRVGLDYVKVGQQATTLSGGEAQRVKLSKELSRRATGRTLYILDEPTTGLHFHDVKK 898
Query: 1473 LLDALRKLGEKGNTLVVVEHDEDTIRCADHIIDIGPGAGKRGGTLVAQGGVAALSASADS 1532
LL+ L +L E+GN++VV+EH+ + I+ AD I+D+GP G GG +V G ++AS S
Sbjct: 899 LLEVLHELVEQGNSVVVIEHNLEVIKTADWILDLGPEGGDGGGEIVVAGTPETVAASKRS 958
Query: 1533 LTGQFLAQPILHPLQPRREVTPAGKNNEAVP 1563
TG+FLA+ + +P + A +A P
Sbjct: 959 HTGRFLAEVLAR--RPFADDRKASAGTDAKP 987
Score = 55.5 bits (132), Expect = 4e-11
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 29/143 (20%)
Query: 1565 RWLTVHNATKHNLRNVTASIPLARLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSP 1624
R L+V A +HNL+NV IP LV TG+SGSGKS+LA D + A
Sbjct: 26 RTLSVRGAREHNLKNVDLEIPRDSLVVFTGLSGSGKSSLAFDTIYA-------------- 71
Query: 1625 ATRRARKAAGSEAPARSQATARTEPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGK 1684
E R + R+ LE+ + + + + ++Q K
Sbjct: 72 -----------EGQRRYVESLSAYARQFLEMMQK----PDVDQIDGLSPAISIEQKTTSK 116
Query: 1685 TPRSCPATYIGVWDTIRKLFAQT 1707
PRS T ++D +R L+A+T
Sbjct: 117 NPRSTVGTVTEIYDYMRLLWART 139
Score = 52.8 bits (125), Expect = 2e-10
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 15/104 (14%)
Query: 5 VIRIRGARQHNLKNLDLDLHTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYAR 64
++++ GAR +NLKN+ ++ G T +TG SG GKS+L+ DTLY A AR
Sbjct: 641 MLKLTGARGNNLKNVTAEIPLGLFTCITGVSGGGKSTLLIDTLY-----------KAVAR 689
Query: 65 QFLDRMDRP-QVDRVDG---VPPAIAIDQTNPVRSSRSTVGTMT 104
+ + P D+++G + I IDQ+ R+ RS T T
Sbjct: 690 RLNGASEAPAPFDKLEGLEHLDKVIDIDQSPIGRTPRSNPATYT 733
Score = 30.8 bits (68), Expect = 0.001
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 1701 RKLFAQTLEAKARGYSASR-----FSFNTGDGRCPACEGQGV 1737
R +F++ G++ FSFN G CPAC+G GV
Sbjct: 272 RIIFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPACDGLGV 313