Pairwise Alignments
Query, 1940 a.a., excinuclease ABC subunit A from Cupriavidus basilensis FW507-4G11
Subject, 954 a.a., excinuclease ABC subunit UvrA from Ralstonia solanacearum UW163
Score = 639 bits (1649), Expect = 0.0
Identities = 399/1013 (39%), Positives = 555/1013 (54%), Gaps = 108/1013 (10%)
Query: 6 IRIRGARQHNLKNLDLDLHTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
I+IRGAR HNLKN++LDL ++ V+TG SGSGKSSL FDTLYAEGQRRYVE+ SAYARQ
Sbjct: 4 IKIRGARTHNLKNINLDLPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
Query: 66 FLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAELFDRQT 125
FL M++P VD ++G+ PAI+I+Q + RSTVGT+TE++D+L+LLYARA + +
Sbjct: 64 FLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPEH 123
Query: 126 AQPVRHDSPETIYAELQARAAQGDPRLVVTFPVELPETTTDAEIEQWLSVSGYTRVQAQ- 184
QP+ S + A A D +L++ PV + ++ + + G+ R + +
Sbjct: 124 GQPLEAQSVSQMVDA--ALALPADTKLMILAPVVVNRKGEHVDLFEAMQAQGFVRFRVRS 181
Query: 185 ----------RVVASPTGPR------KVLDVVADRFRLGNTEKVRVLEAIEASLKRGSGR 228
+V T P+ +DVV DR ++ K R+ E+ E +L+ GR
Sbjct: 182 GGGTAHEAQAKVYEVDTLPKLKKNDKHTIDVVVDRVKVNPELKQRLAESFETALRLADGR 241
Query: 229 VNVYVTDAANEGAQAQVWRFSTGLHSPESDIRYADPQPALFSFNSAYGACETCRGFGRVI 288
D E FS+ P + +P LFSFN+ GAC C G G++
Sbjct: 242 AVALEMDTGKEHV------FSSKFACPICAYSLQELEPRLFSFNNPMGACPHCDGLGQIT 295
Query: 289 GVDLGLVIPDERKTLRGGAIKPMQTPAWKECQDDLMRYAAKAGIPRDVAWSSLTPAERAW 348
D V+ +L GAIK Q L AA D + L A +
Sbjct: 296 FFDPKRVVAFPNLSLASGAIKGWDRRNQFYFQM-LQSLAAFYDFDTDTPFEELPKAVQDV 354
Query: 349 VIDGSPDWN---------GKWNTHWYGVKRFFDYLESKAYK----MHIRVLLSKYRSYTP 395
V+ GS G+ + + LE + YK + +R L+KY++
Sbjct: 355 VLQGSDQQQIPFTYINERGRTTVREHAFEGIIPNLERR-YKETDSIAVREELAKYQNNQA 413
Query: 396 CETCGGARLKTEALLWRLGSKPGADAVCAPQKRFAPRGVDWDRTQLEALPGLTVHDLMLM 455
C C G RL+ EA ++G A A+ +++
Sbjct: 414 CPECEGTRLRREARHVKIGDDGQARAI---------------------------YEINGW 446
Query: 456 PIERIRKFFDELTLPSLMLDDALKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEVQ 515
P+ +F L L + A K++ E+ +RL +L +VGL YL+L+R + TLSGGE Q
Sbjct: 447 PLRDALTYFLTLNLHGAKREIADKIV-QEITSRLNFLNNVGLDYLSLERSADTLSGGEAQ 505
Query: 516 RINLTTALGTSLVKTLFVLDEPSIGLHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSVMLA 575
RI L + +G+ L ++VLDEPSIGLH RD +R++ + LRD GN+++VVEHD ++ A
Sbjct: 506 RIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDLGNSVLVVEHDEDMIRA 565
Query: 576 ADRLIDMGPGPGERGGNIIFDGTPADIRGS-GTLTGEYLAGHRQVT--------DLSRWT 626
+D ++D+GPG G GG +I +GTP I S G+LTGEYL+G R++ D RW
Sbjct: 566 SDHVVDIGPGAGVHGGQVIAEGTPGQIEQSPGSLTGEYLSGKRRIEVPPQRTAPDEERWL 625
Query: 627 PRAVDAATPRIVLEGASEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLLQDVLYPAMARQF 686
RIV AS +NL++V +IP+ L CVTGVSGSGKSTL+ D LY A+AR
Sbjct: 626 ---------RIV--NASGNNLKNVNADIPVGLLTCVTGVSGSGKSTLINDTLYNAVARHL 674
Query: 687 GKSTDAPGAFRSLTGAEQVADVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAKAPMALQ 746
ST P A + G E V+ VDQSPIG+T RSNPA+Y G F IR+L+A P A +
Sbjct: 675 YGSTPEPTAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELYAGVPAAKE 734
Query: 747 RSYTAGMFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGRRYRAEILEVKIERA 806
R Y G FSFN GRC C G G VEM FL DVY+ C C G+RY E LEV
Sbjct: 735 RGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHGKRYNRETLEVLY--- 791
Query: 807 LPGQPPRALSVADVLELTVSEAVAYFAGDAAVLRVLQPIVDVGLEYVKLGQPVPTLSGGE 866
+ ++ +VLE+TV +A +FA V R LQ ++DVGL Y++LGQ TLSGGE
Sbjct: 792 ------KGKNITEVLEMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSATTLSGGE 845
Query: 867 AQRLKLAGYLAETAQASNTRVKPMPYECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGH 926
AQR+KL+ E ++ R L++ DEPTTGLHF DI L++ KL D G+
Sbjct: 846 AQRVKLS---LELSKRDTGRT--------LYILDEPTTGLHFHDIELLLKVIYKLRDHGN 894
Query: 927 SLIVIEHNLDVVRAADWIIDLGPEGGDAGGEVLCVGTPEDVKRCAHSHTGKAL 979
++++IEHNLDV++ ADW++DLGPEGG GG+++ GTPE+V + S TGK L
Sbjct: 895 TIVIIEHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEEVAKSRASFTGKYL 947
Score = 514 bits (1325), Expect = e-149
Identities = 285/593 (48%), Positives = 368/593 (62%), Gaps = 57/593 (9%)
Query: 1352 CADCGGTRLNPVARAVTF----DTHPIVAVAQWTVSDTHRWVQGLHLAGREGEIARDVVS 1407
C +C GTRL AR V I + W + D + L+L G + EIA +V
Sbjct: 414 CPECEGTRLRREARHVKIGDDGQARAIYEINGWPLRDALTYFLTLNLHGAKREIADKIVQ 473
Query: 1408 EIRSRLQFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLHP 1467
EI SRL FL VGL YLSL+R+A +LSGGEAQRIRLA+Q+GS L GV YVLDEP+IGLH
Sbjct: 474 EITSRLNFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQ 533
Query: 1468 RDNQILLDALRKLGEKGNTLVVVEHDEDTIRCADHIIDIGPGAGKRGGTLVAQGGVAALS 1527
RDN L+ L+ L + GN+++VVEHDED IR +DH++DIGPGAG GG ++A+G +
Sbjct: 534 RDNDRLIGTLKHLRDLGNSVLVVEHDEDMIRASDHVVDIGPGAGVHGGQVIAEGTPGQIE 593
Query: 1528 ASADSLTGQFLAQPILHPLQPRREVTPAGKNNEAVPERWLTVHNATKHNLRNVTASIPLA 1587
S SLTG++L+ + R EV P + ERWL + NA+ +NL+NV A IP+
Sbjct: 594 QSPGSLTGEYLSG------KRRIEVPP--QRTAPDEERWLRIVNASGNNLKNVNADIPVG 645
Query: 1588 RLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSPATRRARKAAGSEAPARSQATART 1647
L +TGVSGSGKSTL D L +AV R + S A
Sbjct: 646 LLTCVTGVSGSGKSTLINDTLY----NAVARHLYGSTPEPTAH----------------- 684
Query: 1648 EPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGKTPRSCPATYIGVWDTIRKLFAQT 1707
+ I G E D+V+ VDQ+PIG+TPRS PATY G++ IR+L+A
Sbjct: 685 ---------------DRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELYAGV 729
Query: 1708 LEAKARGYSASRFSFNTGDGRCPACEGQGVRTIGMSFLPDVKVHCDVCHGQRFNPETLAV 1767
AK RGY RFSFN GRC AC+G GV + M FLPDV V CDVCHG+R+N ETL V
Sbjct: 730 PAAKERGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHGKRYNRETLEV 789
Query: 1768 TWRGKNIGDVLTMEIDEAVEFFSAMSNIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQRI 1827
++GKNI +VL M +++A EFF+ + + LQ + DVGLGY+ LGQ + TLSGGEAQR+
Sbjct: 790 LYKGKNITEVLEMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSATTLSGGEAQRV 849
Query: 1828 KLVTELSKVRDDITRRGQQAPHTLYVLDEPTVGLHMADVAKLIRVLHRLADGGHSVVVIE 1887
KL ELSK + TLY+LDEPT GLH D+ L++V+++L D G+++V+IE
Sbjct: 850 KLSLELSK---------RDTGRTLYILDEPTTGLHFHDIELLLKVIYKLRDHGNTIVIIE 900
Query: 1888 HDLDVIAEADWILDLGPEGGVAGGGIVAATDPEGLVRVRASHTGAALAPVLAR 1940
H+LDVI ADW+LDLGPEGG GG I+A PE + + RAS TG LAP+L R
Sbjct: 901 HNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEEVAKSRASFTGKYLAPLLKR 953
Score = 198 bits (504), Expect = 3e-54
Identities = 114/305 (37%), Positives = 170/305 (55%), Gaps = 24/305 (7%)
Query: 1016 DVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESLNAYA 1075
+ ++I A HNLK +N+D+P + VITG+SGSGKS+LAFD L+ EGQRRY+ESL+AYA
Sbjct: 2 EAIKIRGARTHNLKNINLDLPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
Query: 1076 RSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLMYVKLGIQHCI 1135
R +Q +P+VD + G+ P ++IEQ+ + +STV T +E+ +LRL+Y + G +C
Sbjct: 62 RQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCP 121
Query: 1136 HDGTPVTSQSPESIAAQLLRDYKGQHVGLLAPLVVSRKGVYTDLAKWAKARGNTHLRV-- 1193
G P+ +QS + L + +LAP+VV+RKG + DL + +A+G RV
Sbjct: 122 EHGQPLEAQSVSQMVDAALALPADTKLMILAPVVVNRKGEHVDLFEAMQAQGFVRFRVRS 181
Query: 1194 --------DGEFLPVDPWPRLDRFREHTIELPVGDIIVSADNEAALRALLGQALEAGKGV 1245
+ VD P+L + +HTI++ V + V+ + + L AL G
Sbjct: 182 GGGTAHEAQAKVYEVDTLPKLKKNDKHTIDVVVDRVKVNPELKQRLAESFETALRLADGR 241
Query: 1246 MHLLAPLDGLQHAMGNGGTARVGSTTVFSTKRACPVCSTSYPELDPRLFSYNSKHGWCTS 1305
L G +H VFS+K ACP+C+ S EL+PRLFS+N+ G C
Sbjct: 242 AVALEMDTGKEH--------------VFSSKFACPICAYSLQELEPRLFSFNNPMGACPH 287
Query: 1306 CVGTG 1310
C G G
Sbjct: 288 CDGLG 292
Score = 148 bits (373), Expect = 4e-39
Identities = 113/359 (31%), Positives = 174/359 (48%), Gaps = 64/359 (17%)
Query: 786 CPDCDGRRYRAEILEVKIERALPGQPPRALSVADVLELTVSEAVAYF-------AGDAAV 838
CP+C+G R R E VKI G +A ++ ++ + +A+ YF A
Sbjct: 414 CPECEGTRLRREARHVKI-----GDDGQARAIYEINGWPLRDALTYFLTLNLHGAKREIA 468
Query: 839 LRVLQPIV-------DVGLEYVKLGQPVPTLSGGEAQRLKLAGYLAETAQASNTRVKPMP 891
+++Q I +VGL+Y+ L + TLSGGEAQR++LA +
Sbjct: 469 DKIVQEITSRLNFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGV-------- 520
Query: 892 YECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLDVVRAADWIIDLGPEG 951
+++ DEP+ GLH D +L+ L D G+S++V+EH+ D++RA+D ++D+GP
Sbjct: 521 ----MYVLDEPSIGLHQRDNDRLIGTLKHLRDLGNSVLVVEHDEDMIRASDHVVDIGPGA 576
Query: 952 GDAGGEVLCVGTPEDVKRCAHSHTGKALLQYDRAVGHAFVAQDAGVPLQAALRAARARRA 1011
G GG+V+ GTP +++ S TG+ L R VP Q R A
Sbjct: 577 GVHGGQVIAEGTPGQIEQSPGSLTGEYLSGKRRIE----------VPPQ--------RTA 618
Query: 1012 IEGEDVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESL 1071
+ E +RIVNA +NLK +N DIP G +TGVSGSGKSTL D L+
Sbjct: 619 PDEERWLRIVNASGNNLKNVNADIPVGLLTCVTGVSGSGKSTLINDTLY----------- 667
Query: 1072 NAYAR----SIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLMY 1126
NA AR S +P +D + + ++Q +S AT + ++ +R +Y
Sbjct: 668 NAVARHLYGSTPEPTAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELY 726
Score = 138 bits (348), Expect = 3e-36
Identities = 90/255 (35%), Positives = 128/255 (50%), Gaps = 42/255 (16%)
Query: 1290 DPRLFSYNSKHGWCTSCVGTGLTLTREQRAAYDDTVMADDNRGREQTLPSEQQEPDDVAD 1349
DP FS+N K G C +C G G+ L E DV
Sbjct: 738 DPGRFSFNVKGGRCEACQGDGV-------------------------LKVEMHFLPDVY- 771
Query: 1350 TPCADCGGTRLNPVARAVTFDTHPIVAVAQWTVSDTHRWVQGLHLAGREGEIARDVVSEI 1409
PC C G R N V + I V + TV H + V +
Sbjct: 772 VPCDVCHGKRYNRETLEVLYKGKNITEVLEMTVEQAHEFFAP--------------VPVV 817
Query: 1410 RSRLQFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQG-VCYVLDEPTIGLHPR 1468
R +LQ L +VGLGY+ L ++A +LSGGEAQR++L+ +L G Y+LDEPT GLH
Sbjct: 818 RRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFH 877
Query: 1469 DNQILLDALRKLGEKGNTLVVVEHDEDTIRCADHIIDIGPGAGKRGGTLVAQGGVAALSA 1528
D ++LL + KL + GNT+V++EH+ D I+ AD ++D+GP G GG ++A+G ++
Sbjct: 878 DIELLLKVIYKLRDHGNTIVIIEHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEEVAK 937
Query: 1529 SADSLTGQFLAQPIL 1543
S S TG++LA P+L
Sbjct: 938 SRASFTGKYLA-PLL 951
Score = 48.9 bits (115), Expect = 3e-09
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 1567 LTVHNATKHNLRNVTASIPLARLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSPAT 1626
+ + A HNL+N+ +P +LV ITG+SGSGKS+LA D L A
Sbjct: 4 IKIRGARTHNLKNINLDLPRNQLVVITGLSGSGKSSLAFDTLYAE--------------- 48
Query: 1627 RRARKAAGSEAPARSQATARTEPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGKTP 1686
+ R A AR +P + E + + ++Q P
Sbjct: 49 GQRRYVESLSAYARQFLQLMEKP--------------DVDLIEGLSPAISIEQKATSHNP 94
Query: 1687 RSCPATYIGVWDTIRKLFAQ 1706
RS T + D +R L+A+
Sbjct: 95 RSTVGTVTEIHDYLRLLYAR 114