Pairwise Alignments
Query, 1940 a.a., excinuclease ABC subunit A from Cupriavidus basilensis FW507-4G11
Subject, 944 a.a., UvrABC system protein A from Pseudomonas sp. DMC3
Score = 621 bits (1601), Expect = 0.0
Identities = 399/1012 (39%), Positives = 559/1012 (55%), Gaps = 103/1012 (10%)
Query: 6 IRIRGARQHNLKNLDLDLHTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
I IRGAR HNLKN+DL L ++ V+TG SGSGKSSL FDTLYAEGQRRYVE+ SAYARQ
Sbjct: 4 ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
Query: 66 FLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAELFDRQT 125
FL M++P VD ++G+ PAI+I+Q + + RSTVGT+TE+ D+L+LLYAR T
Sbjct: 64 FLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVG------T 117
Query: 126 AQPVRHDSP---ETIYAELQARAAQGD-PRLVVTFPVELPETTTDAEIEQWLSVSGYTRV 181
+ HD P +T+ + AQ + +L++ PV + + L G+ R
Sbjct: 118 PRCPDHDIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVIRERKGEHLSVFEELRAQGFVRA 177
Query: 182 QAQ-RVVASPTGP------RKVLDVVADRFRLGNTEKVRVLEAIEASLKRGSGRVNVYVT 234
+ R+ P + +DV+ DRF++ + R+ E+ E +LK G V
Sbjct: 178 RVNGRICELDELPKLDKQKKHSIDVIVDRFKVRADLQQRLAESFETALKLADGIALVAPM 237
Query: 235 DAANEGAQAQVWRFSTGLHSPESDIRYADPQPALFSFNSAYGACETCRGFGRVIGVDLGL 294
D +E + + FS P ++ +P LFSFN+ GAC TC G G D+
Sbjct: 238 D--DEPGEEMI--FSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKR 293
Query: 295 VIPDERKTLRGGAIKPMQTPAWKECQ----DDLMRYAAKAGIPRDVAWSSLTPAERAWVI 350
++ E TL GAI+ W L A+ D ++ L+ ++ +++
Sbjct: 294 LVNGE-LTLAEGAIR-----GWDRRNVYYFQMLGSLASHYKFSLDKPFNDLSAEQQKFIL 347
Query: 351 DGSPDWNGKW---NTHWYGVKRFFDY------LESK---AYKMHIRVLLSKYRSYTPCET 398
GS N + N VKR + LE + +R L+K+ S+ C
Sbjct: 348 HGSGSQNVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSHQACPD 407
Query: 399 CGGARLKTEALLWRLGSKPGADAVCAPQKRFAPRGVDWDRTQLEALPGLTVHDLMLMPIE 458
C G RL+ EA +G K LP +T +PI
Sbjct: 408 CRGTRLRREARHVWVGEK--------------------------TLPAVT-----NLPIG 436
Query: 459 RIRKFFDELTLPSLMLDDALKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEVQRIN 518
++F L + + A K +L E+R RL++L +VGL YL+LDR + TLSGGE QRI
Sbjct: 437 DACEYFGALKMTGRRGEIADK-ILKEIRERLQFLVNVGLDYLSLDRSADTLSGGEAQRIR 495
Query: 519 LTTALGTSLVKTLFVLDEPSIGLHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSVMLAADR 578
L + +G LV L++LDEPSIGLH RD +R++ + LRD GNT++VVEHD + AD
Sbjct: 496 LASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADY 555
Query: 579 LIDMGPGPGERGGNIIFDGTPADIRG-SGTLTGEYLAGHRQVTDLSRWTPRAVDAATPRI 637
++D+GPG G GG I+ +GTP ++ +LTG+YL+G ++ ++ TPR +
Sbjct: 556 VVDIGPGAGVHGGRIVAEGTPDEVMAHPDSLTGKYLSGRVKIEVPAKRTPRNKKL---NL 612
Query: 638 VLEGASEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLLQDVLYPAMARQF-GKSTDAPGAF 696
L+GA +NLR+V ++IP+ L CVTGVSGSGKSTL+ + L+P A G +T A
Sbjct: 613 SLKGARGNNLRNVDLDIPIGLLTCVTGVSGSGKSTLINNTLFPLSATALNGATTLEAAAH 672
Query: 697 RSLTGAEQVADVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAKAPMALQRSYTAGMFSF 756
S+ G E + VV +DQSPIG+T RSNPA+Y G F IR+LFA P + R Y G FSF
Sbjct: 673 DSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPESRSRGYGPGRFSF 732
Query: 757 NSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGRRYRAEILEVKIERALPGQPPRALS 816
N GRC C G G VEM FL D+Y+ C C +RY E LE+K + S
Sbjct: 733 NVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKY---------KGKS 783
Query: 817 VADVLELTVSEAVAYFAGDAAVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGYL 876
+ + LE+T+ EA +F A+ R LQ ++DVGL Y+KLGQ TLSGGEAQR+KL+ L
Sbjct: 784 IHETLEMTIEEAREFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSREL 843
Query: 877 AETAQASNTRVKPMPYECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLD 936
++ L++ DEPTTGLHF DI +L+ +L D G++++VIEHNLD
Sbjct: 844 SKRDTGKT-----------LYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLD 892
Query: 937 VVRAADWIIDLGPEGGDAGGEVLCVGTPEDVKRCAHSHTG---KALLQYDRA 985
V++ ADW++DLGPEGG GG+++ GTPE+V SHTG K LL DRA
Sbjct: 893 VIKTADWLVDLGPEGGSKGGQIIATGTPEEVAEMKQSHTGHYLKPLLIRDRA 944
Score = 514 bits (1323), Expect = e-149
Identities = 290/614 (47%), Positives = 379/614 (61%), Gaps = 55/614 (8%)
Query: 1329 DNRGREQTLPSEQQE-PDDVADTPCADCGGTRLNPVARAVTFDTHPIVAVAQWTVSDTHR 1387
+ R RE S ++E ++ C DC GTRL AR V + AV + D
Sbjct: 381 ERRYRETESASVREELAKFLSHQACPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDACE 440
Query: 1388 WVQGLHLAGREGEIARDVVSEIRSRLQFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQL 1447
+ L + GR GEIA ++ EIR RLQFL VGL YLSLDR+A +LSGGEAQRIRLA+Q+
Sbjct: 441 YFGALKMTGRRGEIADKILKEIRERLQFLVNVGLDYLSLDRSADTLSGGEAQRIRLASQI 500
Query: 1448 GSNLQGVCYVLDEPTIGLHPRDNQILLDALRKLGEKGNTLVVVEHDEDTIRCADHIIDIG 1507
G+ L GV Y+LDEP+IGLH RDN LL L+ L + GNT++VVEHDED IR AD+++DIG
Sbjct: 501 GAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIG 560
Query: 1508 PGAGKRGGTLVAQGGVAALSASADSLTGQFLAQPILHPLQPRREVTPAGKNNEAVPERWL 1567
PGAG GG +VA+G + A DSLTG++L+ + + +R TP K L
Sbjct: 561 PGAGVHGGRIVAEGTPDEVMAHPDSLTGKYLSGRVKIEVPAKR--TPRNKKLN------L 612
Query: 1568 TVHNATKHNLRNVTASIPLARLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSPATR 1627
++ A +NLRNV IP+ L +TGVSGSGKSTL + L P +
Sbjct: 613 SLKGARGNNLRNVDLDIPIGLLTCVTGVSGSGKSTLINNTLF--------------PLSA 658
Query: 1628 RARKAAGS-EAPARSQATARTEPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGKTP 1686
A A + EA A +SI G E +D+V+++DQ+PIG+TP
Sbjct: 659 TALNGATTLEAAAH----------------------DSIKGLEHLDKVVDIDQSPIGRTP 696
Query: 1687 RSCPATYIGVWDTIRKLFAQTLEAKARGYSASRFSFNTGDGRCPACEGQGVRTIGMSFLP 1746
RS PATY G++ IR+LFA E+++RGY RFSFN GRC AC+G G+ + M FLP
Sbjct: 697 RSNPATYTGLFTPIRELFAGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLP 756
Query: 1747 DVKVHCDVCHGQRFNPETLAVTWRGKNIGDVLTMEIDEAVEFFSAMSNIAHPLQLMKDVG 1806
D+ V CDVC +R+N ETL + ++GK+I + L M I+EA EFF A+ +A LQ + DVG
Sbjct: 757 DIYVPCDVCKSKRYNRETLEIKYKGKSIHETLEMTIEEAREFFDAVPALARKLQTLMDVG 816
Query: 1807 LGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQQAPHTLYVLDEPTVGLHMADV 1866
L Y+ LGQ + TLSGGEAQR+KL ELSK + TLY+LDEPT GLH AD+
Sbjct: 817 LSYIKLGQSATTLSGGEAQRVKLSRELSK---------RDTGKTLYILDEPTTGLHFADI 867
Query: 1867 AKLIRVLHRLADGGHSVVVIEHDLDVIAEADWILDLGPEGGVAGGGIVAATDPEGLVRVR 1926
+L+ VLHRL D G++VVVIEH+LDVI ADW++DLGPEGG GG I+A PE + ++
Sbjct: 868 QQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIATGTPEEVAEMK 927
Query: 1927 ASHTGAALAPVLAR 1940
SHTG L P+L R
Sbjct: 928 QSHTGHYLKPLLIR 941
Score = 206 bits (523), Expect = 2e-56
Identities = 109/296 (36%), Positives = 174/296 (58%), Gaps = 12/296 (4%)
Query: 1016 DVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESLNAYA 1075
D + I A HNLK +++ +P K VITG+SGSGKS+LAFD L+ EGQRRY+ESL+AYA
Sbjct: 2 DKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
Query: 1076 RSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLMYVKLGIQHCI 1135
R + +P+VD + G+ P ++IEQ+ + +STV T +E++ +LRL+Y ++G C
Sbjct: 62 RQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCP 121
Query: 1136 HDGTPVTSQSPESIAAQLLRDYKGQHVGLLAPLVVSRKGVYTDLAKWAKARGNTHLRVDG 1195
P+ +Q+ + +L +G + LLAP++ RKG + + + +A+G RV+G
Sbjct: 122 DHDIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVIRERKGEHLSVFEELRAQGFVRARVNG 181
Query: 1196 EFLPVDPWPRLDRFREHTIELPVGDIIVSADNEAALRALLGQALEAGKGVMHLLAPLDGL 1255
+D P+LD+ ++H+I++ V V AD + L AL+ G+ L+AP+D
Sbjct: 182 RICELDELPKLDKQKKHSIDVIVDRFKVRADLQQRLAESFETALKLADGIA-LVAPMDD- 239
Query: 1256 QHAMGNGGTARVGSTTVFSTKRACPVCSTSYPELDPRLFSYNSKHGWCTSCVGTGL 1311
G +FS + ACP+C + EL+P+LFS+N+ G C +C G G+
Sbjct: 240 ----------EPGEEMIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGV 285
Score = 136 bits (343), Expect = 1e-35
Identities = 101/299 (33%), Positives = 149/299 (49%), Gaps = 57/299 (19%)
Query: 777 QFLSDVYLRCPDCDGRRYRAEILEVKI-ERALPGQPPRALSVADVLELTVSEAVAYFA-- 833
+FLS + CPDC G R R E V + E+ LP V L + +A YF
Sbjct: 398 KFLS--HQACPDCRGTRLRREARHVWVGEKTLPA----------VTNLPIGDACEYFGAL 445
Query: 834 ------GDAA------VLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGYLAETAQ 881
G+ A + LQ +V+VGL+Y+ L + TLSGGEAQR++LA +
Sbjct: 446 KMTGRRGEIADKILKEIRERLQFLVNVGLDYLSLDRSADTLSGGEAQRIRLASQIGAGLV 505
Query: 882 ASNTRVKPMPYECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLDVVRAA 941
L++ DEP+ GLH D +L+ L D G+++IV+EH+ D +R A
Sbjct: 506 GV------------LYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAIRLA 553
Query: 942 DWIIDLGPEGGDAGGEVLCVGTPEDVKRCAHSHTGKALLQYDRAVGHAFVAQDAGVPLQA 1001
D+++D+GP G GG ++ GTP++V S TGK L G + VP +
Sbjct: 554 DYVVDIGPGAGVHGGRIVAEGTPDEVMAHPDSLTGKYLS------GRVKIE----VPAKR 603
Query: 1002 ALRAARARRAIEGEDVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILF 1060
R + +++G A +NL+ +++DIP G +TGVSGSGKSTL + LF
Sbjct: 604 TPRNKKLNLSLKG--------ARGNNLRNVDLDIPIGLLTCVTGVSGSGKSTLINNTLF 654
Score = 58.9 bits (141), Expect = 3e-12
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 636 RIVLEGASEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLLQDVLY-----------PAMAR 684
+I++ GA HNL+++ + +P +L+ +TG+SGSGKS+L D LY A AR
Sbjct: 3 KILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
Query: 685 QFGKSTDAPGAFRSLTGAEQVADVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAK 740
QF + P + E ++ + ++Q RS + +D +R L+A+
Sbjct: 63 QFLSMMEKP----DVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYAR 114
Score = 52.0 bits (123), Expect = 4e-10
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 29/140 (20%)
Query: 1567 LTVHNATKHNLRNVTASIPLARLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSPAT 1626
+ + A HNL+N+ ++P +L+ ITG+SGSGKS+LA D L A
Sbjct: 4 ILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAE--------------- 48
Query: 1627 RRARKAAGSEAPARSQATARTEPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGKTP 1686
+ R A AR + +P + E + + ++Q P
Sbjct: 49 GQRRYVESLSAYARQFLSMMEKP--------------DVDTIEGLSPAISIEQKSTSHNP 94
Query: 1687 RSCPATYIGVWDTIRKLFAQ 1706
RS T ++D +R L+A+
Sbjct: 95 RSTVGTITEIYDYLRLLYAR 114
Score = 30.0 bits (66), Expect = 0.002
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 1720 FSFNTGDGRCPACEGQGVR 1738
FSFN G CP C+G GV+
Sbjct: 268 FSFNNPAGACPTCDGLGVK 286