Pairwise Alignments
Query, 1940 a.a., excinuclease ABC subunit A from Cupriavidus basilensis FW507-4G11
Subject, 941 a.a., excinuclease ABC subunit UvrA from Erwinia tracheiphila SCR3
Score = 638 bits (1646), Expect = 0.0
Identities = 396/1009 (39%), Positives = 556/1009 (55%), Gaps = 111/1009 (11%)
Query: 6 IRIRGARQHNLKNLDLDLHTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
I +RGAR HNLKN++L + ++ VVTG SGSGKSSL FDTLYAEGQRRYVE+ SAYARQ
Sbjct: 4 IEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
Query: 66 FLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAEL----F 121
FL M++P VD ++G+ PAI+I+Q + + RSTVGT+TE++D+L+LL+AR E
Sbjct: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEH 123
Query: 122 DRQTAQPVRHDSPETIYAELQARAAQGDPRLVVTFPVELPETTTDAEIEQWLSVSGYTRV 181
D A + + A + R RL++ P+ ++ + L+ GY R
Sbjct: 124 DVTLAAQTVSQMVDNVLALTEGR------RLMLLAPIIKERKGEHSKTLENLASQGYIRA 177
Query: 182 QAQRVVASPTGPRKV-------LDVVADRFRLGNTEKVRVLEAIEASLKRGSGRVNVYVT 234
+ V + P K+ ++VV DRF++ + + R+ E+ E +L+ G V V
Sbjct: 178 RIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLQQRLAESFETALELSGG--TVVVA 235
Query: 235 DAANEGAQAQVWRFSTGLHSPESDIRYADPQPALFSFNSAYGACETCRGFGRVIGVDLGL 294
D + A+ V FS P ++ +P LFSFN+ GAC TC G G D
Sbjct: 236 DMDDTSAEELV--FSANFACPVCGYSMSELEPRLFSFNNPAGACATCDGLGVQQYFDPER 293
Query: 295 VIPDERKTLRGGAIKPMQTPAWKECQDDLMRYAAKAGIPRDVAWSSLTPAERAWVIDGSP 354
V+ + +L GGAI+ + Q L + + + SL + R ++ GS
Sbjct: 294 VVQNPDLSLAGGAIRGWDRRNFYYFQM-LCSLSEHLNFDIETPFISLDASTRKVILYGS- 351
Query: 355 DWNGKWNTHW--------------------YGVKRFFDYLESKAYKMHIRVLLSKYRSYT 394
GK N + + ++R + ES A +R L+K+ S
Sbjct: 352 ---GKENIEFKYINDRGDTSVRRHPFEGVLHNMERRYKETESAA----VREDLAKFISNR 404
Query: 395 PCETCGGARLKTEALLWRLGSKPGADAVCAPQKRFAPRGVDWDRTQLEALPGLTVHDLML 454
C +C G RL+ EA R V + T L + +++ M
Sbjct: 405 ACASCEGTRLRREA-----------------------RHVFVENTNLPTISDMSIGHAM- 440
Query: 455 MPIERIRKFFDELTLPSLMLDDALKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEV 514
FF E+ L A K +L E+ RLK+L +VGL YL+L R + TLSGGE
Sbjct: 441 -------TFFQEMKLSGQRAKIAEK-VLKEIGDRLKFLVNVGLNYLSLSRSAETLSGGEA 492
Query: 515 QRINLTTALGTSLVKTLFVLDEPSIGLHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSVML 574
QRI L + +G LV ++VLDEPSIGLH RD R++E + LR+ GNT++VVEHD +
Sbjct: 493 QRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLVHLRNLGNTVIVVEHDEDAIR 552
Query: 575 AADRLIDMGPGPGERGGNIIFDGTPADIRG-SGTLTGEYLAGHRQVTDLSRWTPRAVDAA 633
AAD +ID+GPG G RGG ++ +GT DI +LTG++L+G R + P+ A
Sbjct: 553 AADHVIDIGPGAGVRGGQVVAEGTVDDIMAVDASLTGQFLSGKRSIA-----VPQERVKA 607
Query: 634 TPRIVLE--GASEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLLQDVLYPAMARQF-GKST 690
P VL+ GA +NL+DVT+ +P+ C+TGVSGSGKSTL+ D L+P R G +
Sbjct: 608 APNKVLKLTGAKGNNLKDVTLTLPVGLFSCITGVSGSGKSTLINDTLFPIAQRLLNGATI 667
Query: 691 DAPGAFRSLTGAEQVADVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAKAPMALQRSYT 750
P +R ++G E V+ +DQSPIG+T RSNPA+Y G F +R+LF+ P + R YT
Sbjct: 668 IEPAPYRDISGMEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPVRELFSGVPESRTRGYT 727
Query: 751 AGMFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGRRYRAEILEVKIERALPGQ 810
G FSFN GRC C G G VEM FL D+Y+ C C G+RY E LE+K
Sbjct: 728 PGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY------- 780
Query: 811 PPRALSVADVLELTVSEAVAYFAGDAAVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRL 870
+ S+ +VLE+T+ EA +F A+ R LQ ++DVGL Y++LGQ TLSGGEAQR+
Sbjct: 781 --KGKSIHEVLEMTIEEAREFFDAVPALARKLQTMMDVGLSYIRLGQSATTLSGGEAQRV 838
Query: 871 KLAGYLAETAQASNTRVKPMPYECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIV 930
KLA L++ L++ DEPTTGLHF DI +L+ +L D G++++V
Sbjct: 839 KLARELSKRGTGQT-----------LYILDEPTTGLHFADIQQLLEVLHQLRDQGNTIVV 887
Query: 931 IEHNLDVVRAADWIIDLGPEGGDAGGEVLCVGTPEDVKRCAHSHTGKAL 979
IEHNLDV++ ADWI+DLGPEGG GGE+L GTPE V +C SHT + L
Sbjct: 888 IEHNLDVIKTADWIVDLGPEGGSGGGEILASGTPETVAKCKASHTARFL 936
Score = 513 bits (1321), Expect = e-149
Identities = 283/592 (47%), Positives = 374/592 (63%), Gaps = 52/592 (8%)
Query: 1347 VADTPCADCGGTRLNPVARAVTFDTHPIVAVAQWTVSDTHRWVQGLHLAGREGEIARDVV 1406
+++ CA C GTRL AR V + + ++ ++ + Q + L+G+ +IA V+
Sbjct: 401 ISNRACASCEGTRLRREARHVFVENTNLPTISDMSIGHAMTFFQEMKLSGQRAKIAEKVL 460
Query: 1407 SEIRSRLQFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLH 1466
EI RL+FL VGL YLSL R+A +LSGGEAQRIRLA+Q+G+ L GV YVLDEP+IGLH
Sbjct: 461 KEIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLH 520
Query: 1467 PRDNQILLDALRKLGEKGNTLVVVEHDEDTIRCADHIIDIGPGAGKRGGTLVAQGGVAAL 1526
RDN+ LL+ L L GNT++VVEHDED IR ADH+IDIGPGAG RGG +VA+G V +
Sbjct: 521 QRDNERLLETLVHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVRGGQVVAEGTVDDI 580
Query: 1527 SASADSLTGQFLAQPILHPLQPRREVTPAGKNNEAVPERWLTVHNATKHNLRNVTASIPL 1586
A SLTGQFL+ +R + + +A P + L + A +NL++VT ++P+
Sbjct: 581 MAVDASLTGQFLSG--------KRSIAVPQERVKAAPNKVLKLTGAKGNNLKDVTLTLPV 632
Query: 1587 ARLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSPATRRARKAAGSEAPARSQATAR 1646
ITGVSGSGKSTL D L P +R A PA
Sbjct: 633 GLFSCITGVSGSGKSTLINDTLF--------------PIAQRLLNGATIIEPA------- 671
Query: 1647 TEPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGKTPRSCPATYIGVWDTIRKLFAQ 1706
P R I+G E D+V+++DQ+PIG+TPRS PATY G++ +R+LF+
Sbjct: 672 --PYR------------DISGMEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPVRELFSG 717
Query: 1707 TLEAKARGYSASRFSFNTGDGRCPACEGQGVRTIGMSFLPDVKVHCDVCHGQRFNPETLA 1766
E++ RGY+ RFSFN GRC AC+G GV + M FLPD+ V CD C G+R+N ETL
Sbjct: 718 VPESRTRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLE 777
Query: 1767 VTWRGKNIGDVLTMEIDEAVEFFSAMSNIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQR 1826
+ ++GK+I +VL M I+EA EFF A+ +A LQ M DVGL Y+ LGQ + TLSGGEAQR
Sbjct: 778 IKYKGKSIHEVLEMTIEEAREFFDAVPALARKLQTMMDVGLSYIRLGQSATTLSGGEAQR 837
Query: 1827 IKLVTELSKVRDDITRRGQQAPHTLYVLDEPTVGLHMADVAKLIRVLHRLADGGHSVVVI 1886
+KL ELSK RG TLY+LDEPT GLH AD+ +L+ VLH+L D G+++VVI
Sbjct: 838 VKLARELSK-------RG--TGQTLYILDEPTTGLHFADIQQLLEVLHQLRDQGNTIVVI 888
Query: 1887 EHDLDVIAEADWILDLGPEGGVAGGGIVAATDPEGLVRVRASHTGAALAPVL 1938
EH+LDVI ADWI+DLGPEGG GG I+A+ PE + + +ASHT L P+L
Sbjct: 889 EHNLDVIKTADWIVDLGPEGGSGGGEILASGTPETVAKCKASHTARFLKPLL 940
Score = 194 bits (493), Expect = 5e-53
Identities = 108/296 (36%), Positives = 167/296 (56%), Gaps = 12/296 (4%)
Query: 1016 DVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESLNAYA 1075
D + + A HNLK +N+ IP K V+TG+SGSGKS+LAFD L+ EGQRRY+ESL+AYA
Sbjct: 2 DKIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
Query: 1076 RSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLMYVKLGIQHCI 1135
R + +P+VD + G+ P ++IEQ+ + +STV T +E+ +LRL++ ++G C
Sbjct: 62 RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCP 121
Query: 1136 HDGTPVTSQSPESIAAQLLRDYKGQHVGLLAPLVVSRKGVYTDLAKWAKARGNTHLRVDG 1195
+ +Q+ + +L +G+ + LLAP++ RKG ++ + ++G R+DG
Sbjct: 122 EHDVTLAAQTVSQMVDNVLALTEGRRLMLLAPIIKERKGEHSKTLENLASQGYIRARIDG 181
Query: 1196 EFLPVDPWPRLDRFREHTIELPVGDIIVSADNEAALRALLGQALEAGKGVMHLLAPLDGL 1255
E + P+L+ ++HTIE+ V V D + L ALE G + ++A +D
Sbjct: 182 EVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLQQRLAESFETALELSGGTV-VVADMDDT 240
Query: 1256 QHAMGNGGTARVGSTTVFSTKRACPVCSTSYPELDPRLFSYNSKHGWCTSCVGTGL 1311
VFS ACPVC S EL+PRLFS+N+ G C +C G G+
Sbjct: 241 S-----------AEELVFSANFACPVCGYSMSELEPRLFSFNNPAGACATCDGLGV 285
Score = 135 bits (341), Expect = 2e-35
Identities = 109/355 (30%), Positives = 177/355 (49%), Gaps = 59/355 (16%)
Query: 786 CPDCDGRRYRAEILEVKIERALPGQPPRALSVADVLELTVSEAVAYF-----AGDAAVL- 839
C C+G R R E V +E ++ + ++++ A+ +F +G A +
Sbjct: 406 CASCEGTRLRREARHVFVENT---------NLPTISDMSIGHAMTFFQEMKLSGQRAKIA 456
Query: 840 -RVLQPI-------VDVGLEYVKLGQPVPTLSGGEAQRLKLAGYLAETAQASNTRVKPMP 891
+VL+ I V+VGL Y+ L + TLSGGEAQR++LA +
Sbjct: 457 EKVLKEIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGV-------- 508
Query: 892 YECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLDVVRAADWIIDLGPEG 951
+++ DEP+ GLH D +L+ L + G+++IV+EH+ D +RAAD +ID+GP
Sbjct: 509 ----MYVLDEPSIGLHQRDNERLLETLVHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGA 564
Query: 952 GDAGGEVLCVGTPEDVKRCAHSHTGKALLQYDRAVGHAFVAQDAGVPLQAALRAARARRA 1011
G GG+V+ GT +D+ S TG+ L G +A VP Q ++AA +
Sbjct: 565 GVRGGQVVAEGTVDDIMAVDASLTGQFLS------GKRSIA----VP-QERVKAAPNK-- 611
Query: 1012 IEGEDVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESL 1071
V+++ A +NLK + + +P G F+ ITGVSGSGKSTL D LF QR L
Sbjct: 612 -----VLKLTGAKGNNLKDVTLTLPVGLFSCITGVSGSGKSTLINDTLFPIAQR----LL 662
Query: 1072 NAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLMY 1126
N +I++PA ++ + + I+Q +S AT + ++ +R ++
Sbjct: 663 N--GATIIEPAPYRDISGMEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPVRELF 715
Score = 57.8 bits (138), Expect = 7e-12
Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 23/120 (19%)
Query: 636 RIVLEGASEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLLQDVLY-----------PAMAR 684
+I + GA HNL+++ + IP +L+ VTG+SGSGKS+L D LY A AR
Sbjct: 3 KIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
Query: 685 QFGKSTDAPGAFRSLTGAEQVADVVFVDQSPIGKTARSNPASYVGAFDEI----RKLFAK 740
QF + P + E ++ + ++Q K+ NP S VG EI R LFA+
Sbjct: 63 QFLSLMEKP----DVDHIEGLSPAISIEQ----KSTSHNPRSTVGTITEIHDYLRLLFAR 114
Score = 54.7 bits (130), Expect = 6e-11
Identities = 69/293 (23%), Positives = 109/293 (37%), Gaps = 64/293 (21%)
Query: 1567 LTVHNATKHNLRNVTASIPLARLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSPAT 1626
+ V A HNL+N+ IP +L+ +TG+SGSGKS+LA D L A
Sbjct: 4 IEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAE--------------- 48
Query: 1627 RRARKAAGSEAPARSQATARTEPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGKTP 1686
+ R A AR + +P +V H E + + ++Q P
Sbjct: 49 GQRRYVESLSAYARQFLSLMEKP----DVDH----------IEGLSPAISIEQKSTSHNP 94
Query: 1687 RSCPATYIGVWDTIRKLFAQTLEAKARGYSASRFSFNTGDGRCPACEGQGVRTIGMSFLP 1746
RS T + D +R LFA+ G+ RCP
Sbjct: 95 RSTVGTITEIHDYLRLLFAR-----------------VGEPRCPE--------------H 123
Query: 1747 DVKVHCDVCHGQRFNPETLAVTWRGKNIGDVLTMEIDEAVEFFSAMSNIAHPLQLMKDVG 1806
DV + + LA+T G+ + + + + E + N+A + +
Sbjct: 124 DVTLAAQTV--SQMVDNVLALT-EGRRLMLLAPIIKERKGEHSKTLENLASQGYIRARID 180
Query: 1807 LGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQQAPHTLYVLDEPTV 1859
L P P L + I++V + KVRDD+ +R ++ T L TV
Sbjct: 181 GEVCDLSDP-PKLELQKKHTIEVVVDRFKVRDDLQQRLAESFETALELSGGTV 232
Score = 52.8 bits (125), Expect = 2e-10
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 5 VIRIRGARQHNLKNLDLDLHTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYAR 64
V+++ GA+ +NLK++ L L G + +TG SGSGKS+L+ DTL+ QR
Sbjct: 612 VLKLTGAKGNNLKDVTLTLPVGLFSCITGVSGSGKSTLINDTLFPIAQRLLNGATIIEPA 671
Query: 65 QFLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAE 119
+ D D+V I IDQ+ R+ RS T T + ++ L++ E
Sbjct: 672 PYRDISGMEHFDKV------IDIDQSPIGRTPRSNPATYTGIFTPVRELFSGVPE 720
Score = 28.9 bits (63), Expect = 0.003
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 1703 LFAQTLEAKARGYSASR-----FSFNTGDGRCPACEGQGVR 1738
+F+ GYS S FSFN G C C+G GV+
Sbjct: 246 VFSANFACPVCGYSMSELEPRLFSFNNPAGACATCDGLGVQ 286