Pairwise Alignments
Query, 1940 a.a., excinuclease ABC subunit A from Cupriavidus basilensis FW507-4G11
Subject, 968 a.a., excinuclease ABC subunit A from Caulobacter crescentus NA1000 Δfur
Score = 650 bits (1678), Expect = 0.0
Identities = 392/995 (39%), Positives = 554/995 (55%), Gaps = 78/995 (7%)
Query: 6 IRIRGARQHNLKNLDLDLHTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
IR+RGAR+HNLK++ +D+ GE+ V+TG SGSGKSSL FDT+YAEGQRRYVE+ SAYARQ
Sbjct: 8 IRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 67
Query: 66 FLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAELFDRQT 125
FL+ M +P VD ++G+ PAI+I+Q R+ RSTVGT+TE++D+++LL+AR + T
Sbjct: 68 FLELMSKPDVDLIEGLSPAISIEQKTTSRNPRSTVGTVTEIHDYMRLLWARVGIPYSPAT 127
Query: 126 AQPVRHDSPETIYAELQARAAQGDPRLVVTFPVELPETTTDAEIEQWLSVSGYTRV---- 181
P+ + + ++ A +G ++ V + EI W +G+ R+
Sbjct: 128 GLPIESQTISQMVDKITA-LPEGTRLYLLAPVVRDRKGEYKKEIADWQK-AGFQRLKIDG 185
Query: 182 QAQRVVASPTGPRKV---LDVVADRFRLGNTEKVRVLEAIEASLKRGSGRVNVYVTDAAN 238
Q + +P +K +DVV DR + R+ ++IE +L+ G
Sbjct: 186 QYYPIEDAPALDKKFKHDIDVVVDRVVTKPDMEQRLADSIEQALRLADGLAVAEFATLEE 245
Query: 239 EGAQAQVWRFSTGLHSPESDIRYADPQPALFSFNSAYGACETCRGFGRVIGVDLGLVIPD 298
+ + FS P S A+ +P LFSFN+ GAC C G G + D LVIPD
Sbjct: 246 GETEPRRILFSERFACPVSGFTIAEIEPRLFSFNNPAGACPVCDGLGAKLAFDADLVIPD 305
Query: 299 ERKTLRGGAIKPMQTPAWKECQDDLMRYAAKAGIPRDVAWSSLTPAERAWVIDGSPDWNG 358
+ +TL GGA+ P L A G D W L+ R V++GS
Sbjct: 306 KDRTLHGGAVAPWAKGPSPLYTQTLQALARHYGFSMDEPWHKLSTEARDVVLNGSKGAKI 365
Query: 359 KW----NTHWYGVKRFFD----YLESKAYKMH---IRVLLSKYRSYTPCETCGGARLKTE 407
K+ N Y V++ F+ LE + + +R L +++S TPCE+C G RLK E
Sbjct: 366 KFVYDDNARKYEVEKPFEGVLPNLERRWRETDSSWVREELGRFQSDTPCESCHGKRLKPE 425
Query: 408 ALLWRLGSKPGADAVCAPQKRFAPRGVDWDRTQLEALPGLTVHDLMLMPIERIRKFFDEL 467
AL ++ G+ + ++ +M I R +F L
Sbjct: 426 ALAVKVS-------------------------------GMDIAEVSMMAIRPARDWFAGL 454
Query: 468 T--LPSLMLDDALKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEVQRINLTTALGT 525
L ++ A ++L E+ RL++L DVGL YL + R S TLSGGE QRI L + +G+
Sbjct: 455 EGKLSDKQMEIARRIL-KEINDRLRFLVDVGLDYLNMSRGSGTLSGGESQRIRLASQIGS 513
Query: 526 SLVKTLFVLDEPSIGLHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSVMLAADRLIDMGPG 585
L L+VLDEPSIGLH RD R++ ++ LRD GN+++VVEHD +L AD +IDMGP
Sbjct: 514 GLTGVLYVLDEPSIGLHQRDNTRLLTSLQGLRDLGNSVLVVEHDEEAILTADYVIDMGPA 573
Query: 586 PGERGGNIIFDGTPADIRGSG-TLTGEYLAGHRQVTDLSRWTPRAVDAATPRIVLEGASE 644
G GG I+ G PADI + +LTG+YL G R++ + P + R+V GA+
Sbjct: 574 AGVHGGEIVAQGKPADIMANPKSLTGQYLTGAREIEVPEQRRPISKKKML-RVV--GATG 630
Query: 645 HNLRDVTVEIPLQRLVCVTGVSGSGKSTLLQDVLYPAMARQFGKSTDAPGAFRSLTGAEQ 704
+NL+ VT EIP+ C+TGVSG GKST + LY A AR+ ++DAP + G E
Sbjct: 631 NNLKGVTAEIPVGTFTCITGVSGGGKSTFTIETLYKAAARRLNNASDAPAPHERIEGLEH 690
Query: 705 VADVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAKAPMALQRSYTAGMFSFNSGDGRCP 764
V+ +DQSPIG+T RSNPA+Y GAF IR FA P + R Y G FSFN GRC
Sbjct: 691 FDKVIDIDQSPIGRTPRSNPATYTGAFGPIRDWFAGLPESKARGYGPGRFSFNVKGGRCE 750
Query: 765 TCGGSGFEHVEMQFLSDVYLRCPDCDGRRYRAEILEVKIERALPGQPPRALSVADVLELT 824
C G G +EM FL DVY+ C C G+RY E L+V + ++ADVL++T
Sbjct: 751 ACQGDGVIKIEMHFLPDVYVTCDICKGKRYNRETLDVVF---------KGKTIADVLDMT 801
Query: 825 VSEAVAYFAGDAAVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGYLAETAQASN 884
V EA +F + ++ + VGL Y+K+GQ TLSGGEAQR+KL+ L++ A
Sbjct: 802 VEEAADFFKAVPPIRDKMETLKRVGLSYIKVGQQATTLSGGEAQRVKLSKELSKRATGRT 861
Query: 885 TRVKPMPYECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLDVVRAADWI 944
L++ DEPTTGLHF+D KL+ +L D G++++VIEHNLDVV+ ADW+
Sbjct: 862 -----------LYILDEPTTGLHFEDTKKLLEVLHELADQGNTVVVIEHNLDVVKTADWL 910
Query: 945 IDLGPEGGDAGGEVLCVGTPEDVKRCAHSHTGKAL 979
+D GPEGGD GGE++ VG+P+DV + S TG+ L
Sbjct: 911 LDFGPEGGDGGGEIVAVGSPQDVAKVEASWTGRYL 945
Score = 498 bits (1281), Expect = e-144
Identities = 279/595 (46%), Positives = 358/595 (60%), Gaps = 55/595 (9%)
Query: 1348 ADTPCADCGGTRLNPVARAVTFDTHPIVAVAQWTVSDTHRWVQGLH--LAGREGEIARDV 1405
+DTPC C G RL P A AV I V+ + W GL L+ ++ EIAR +
Sbjct: 410 SDTPCESCHGKRLKPEALAVKVSGMDIAEVSMMAIRPARDWFAGLEGKLSDKQMEIARRI 469
Query: 1406 VSEIRSRLQFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGL 1465
+ EI RL+FL +VGL YL++ R + +LSGGE+QRIRLA+Q+GS L GV YVLDEP+IGL
Sbjct: 470 LKEINDRLRFLVDVGLDYLNMSRGSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGL 529
Query: 1466 HPRDNQILLDALRKLGEKGNTLVVVEHDEDTIRCADHIIDIGPGAGKRGGTLVAQGGVAA 1525
H RDN LL +L+ L + GN+++VVEHDE+ I AD++ID+GP AG GG +VAQG A
Sbjct: 530 HQRDNTRLLTSLQGLRDLGNSVLVVEHDEEAILTADYVIDMGPAAGVHGGEIVAQGKPAD 589
Query: 1526 LSASADSLTGQFLAQPILHPLQPRREVTPAGKNNEAVPERWLTVHNATKHNLRNVTASIP 1585
+ A+ SLTGQ+L RE+ + ++ L V AT +NL+ VTA IP
Sbjct: 590 IMANPKSLTGQYLTGA--------REIEVPEQRRPISKKKMLRVVGATGNNLKGVTAEIP 641
Query: 1586 LARLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSPATRRARKAAGSEAPARSQATA 1645
+ ITGVSG GKST + L A RR A+ + AP
Sbjct: 642 VGTFTCITGVSGGGKSTFTIETLY-------------KAAARRLNNASDAPAPH------ 682
Query: 1646 RTEPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGKTPRSCPATYIGVWDTIRKLFA 1705
E I G E D+V+++DQ+PIG+TPRS PATY G + IR FA
Sbjct: 683 -----------------ERIEGLEHFDKVIDIDQSPIGRTPRSNPATYTGAFGPIRDWFA 725
Query: 1706 QTLEAKARGYSASRFSFNTGDGRCPACEGQGVRTIGMSFLPDVKVHCDVCHGQRFNPETL 1765
E+KARGY RFSFN GRC AC+G GV I M FLPDV V CD+C G+R+N ETL
Sbjct: 726 GLPESKARGYGPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDICKGKRYNRETL 785
Query: 1766 AVTWRGKNIGDVLTMEIDEAVEFFSAMSNIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQ 1825
V ++GK I DVL M ++EA +FF A+ I ++ +K VGL Y+ +GQ + TLSGGEAQ
Sbjct: 786 DVVFKGKTIADVLDMTVEEAADFFKAVPPIRDKMETLKRVGLSYIKVGQQATTLSGGEAQ 845
Query: 1826 RIKLVTELSKVRDDITRRGQQAPHTLYVLDEPTVGLHMADVAKLIRVLHRLADGGHSVVV 1885
R+KL ELSK + TLY+LDEPT GLH D KL+ VLH LAD G++VVV
Sbjct: 846 RVKLSKELSK---------RATGRTLYILDEPTTGLHFEDTKKLLEVLHELADQGNTVVV 896
Query: 1886 IEHDLDVIAEADWILDLGPEGGVAGGGIVAATDPEGLVRVRASHTGAALAPVLAR 1940
IEH+LDV+ ADW+LD GPEGG GG IVA P+ + +V AS TG L +L R
Sbjct: 897 IEHNLDVVKTADWLLDFGPEGGDGGGEIVAVGSPQDVAKVEASWTGRYLKELLDR 951
Score = 209 bits (533), Expect = 1e-57
Identities = 120/320 (37%), Positives = 187/320 (58%), Gaps = 25/320 (7%)
Query: 1018 VRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESLNAYARS 1077
+R+ A EHNLK ++VDIP G+ V+TG+SGSGKS+LAFD ++ EGQRRY+ESL+AYAR
Sbjct: 8 IRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 67
Query: 1078 IVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLMYVKLGIQHCIHD 1137
++ +P+VD + G+ P ++IEQ+ + +STV T +E+ ++RL++ ++GI +
Sbjct: 68 FLELMSKPDVDLIEGLSPAISIEQKTTSRNPRSTVGTVTEIHDYMRLLWARVGIPYSPAT 127
Query: 1138 GTPVTSQSPESIAAQLLRDYKGQHVGLLAPLVVSRKGVY-TDLAKWAKARGNTHLRVDGE 1196
G P+ SQ+ + ++ +G + LLAP+V RKG Y ++A W KA G L++DG+
Sbjct: 128 GLPIESQTISQMVDKITALPEGTRLYLLAPVVRDRKGEYKKEIADWQKA-GFQRLKIDGQ 186
Query: 1197 FLPVDPWPRLDRFREHTIELPVGDIIVSADNEAALRALLGQALEAGKGVMHLLAPLDGLQ 1256
+ P++ P LD+ +H I++ V ++ D E L + QAL G+
Sbjct: 187 YYPIEDAPALDKKFKHDIDVVVDRVVTKPDMEQRLADSIEQALRLADGL----------- 235
Query: 1257 HAMGNGGTARVGST----TVFSTKRACPVCSTSYPELDPRLFSYNSKHGWCTSCVGTGLT 1312
A+ T G T +FS + ACPV + E++PRLFS+N+ G C C G G
Sbjct: 236 -AVAEFATLEEGETEPRRILFSERFACPVSGFTIAEIEPRLFSFNNPAGACPVCDGLGAK 294
Query: 1313 LTREQRAAYD-DTVMADDNR 1331
L A+D D V+ D +R
Sbjct: 295 L------AFDADLVIPDKDR 308
Score = 144 bits (364), Expect = 4e-38
Identities = 102/332 (30%), Positives = 159/332 (47%), Gaps = 62/332 (18%)
Query: 786 CPDCDGRRYRAEILEVKIERALPGQPPRALSVADVLELTVSEAVAYFAGDAAVL------ 839
C C G+R + E L VK+ + +A+V + + A +FAG L
Sbjct: 414 CESCHGKRLKPEALAVKVS---------GMDIAEVSMMAIRPARDWFAGLEGKLSDKQME 464
Query: 840 ---RVLQPI-------VDVGLEYVKLGQPVPTLSGGEAQRLKLAGYLAETAQASNTRVKP 889
R+L+ I VDVGL+Y+ + + TLSGGE+QR++LA +
Sbjct: 465 IARRILKEINDRLRFLVDVGLDYLNMSRGSGTLSGGESQRIRLASQIGSGLTGV------ 518
Query: 890 MPYECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLDVVRAADWIIDLGP 949
L++ DEP+ GLH D +L+ + L D G+S++V+EH+ + + AD++ID+GP
Sbjct: 519 ------LYVLDEPSIGLHQRDNTRLLTSLQGLRDLGNSVLVVEHDEEAILTADYVIDMGP 572
Query: 950 EGGDAGGEVLCVGTPEDVKRCAHSHTGKALLQYDRAVGHAFVAQDAGVPLQAALRAARAR 1009
G GGE++ G P D+ S TG+ L A++ VP Q R
Sbjct: 573 AAGVHGGEIVAQGKPADIMANPKSLTGQYLTG----------AREIEVPEQ--------R 614
Query: 1010 RAIEGEDVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLE 1069
R I + ++R+V A +NLK + +IP G F ITGVSG GKST + L+ RR
Sbjct: 615 RPISKKKMLRVVGATGNNLKGVTAEIPVGTFTCITGVSGGGKSTFTIETLYKAAARRLNN 674
Query: 1070 SLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQ 1101
+ +A PA ++ + + I+Q
Sbjct: 675 ASDA-------PAPHERIEGLEHFDKVIDIDQ 699
Score = 50.1 bits (118), Expect = 1e-09
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 1566 WLTVHNATKHNLRNVTASIPLARLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSPA 1625
++ V A +HNL++V+ IP LV +TG+SGSGKS+LA D + A
Sbjct: 7 FIRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSLAFDTIYAE-------------- 52
Query: 1626 TRRARKAAGSEAPARSQATARTEPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGKT 1685
+ R A AR ++P + E + + ++Q +
Sbjct: 53 -GQRRYVESLSAYARQFLELMSKP--------------DVDLIEGLSPAISIEQKTTSRN 97
Query: 1686 PRSCPATYIGVWDTIRKLFAQ 1706
PRS T + D +R L+A+
Sbjct: 98 PRSTVGTVTEIHDYMRLLWAR 118
Score = 49.3 bits (116), Expect = 3e-09
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 5 VIRIRGARQHNLKNLDLDLHTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYAR 64
++R+ GA +NLK + ++ G T +TG SG GKS+ +TLY RR A A
Sbjct: 622 MLRVVGATGNNLKGVTAEIPVGTFTCITGVSGGGKSTFTIETLYKAAARRLNNASDAPA- 680
Query: 65 QFLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMT 104
+++ ++ I IDQ+ R+ RS T T
Sbjct: 681 ------PHERIEGLEHFDKVIDIDQSPIGRTPRSNPATYT 714
Score = 30.4 bits (67), Expect = 0.001
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 1701 RKLFAQTLEAKARGYSASR-----FSFNTGDGRCPACEGQGVR 1738
R LF++ G++ + FSFN G CP C+G G +
Sbjct: 252 RILFSERFACPVSGFTIAEIEPRLFSFNNPAGACPVCDGLGAK 294