Pairwise Alignments

Query, 398 a.a., Retron-type reverse transcriptase from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 505 a.a., reverse transcriptase from Sinorhizobium meliloti 1021

 Score =  139 bits (349), Expect = 2e-37
 Identities = 108/304 (35%), Positives = 151/304 (49%), Gaps = 50/304 (16%)

Query: 38  SVGVDGESWNAYGLRLPDR-LPELLRTVKSGEYKAPQIRRVYIPK-GKTGK-RPLGIPTI 94
           + GVDG +      R   R L +L   ++SG Y+    RR  IPK GK G+ RPLGIPTI
Sbjct: 59  TAGVDGMTVGRIRNRSEHRFLVDLQADLRSGAYRPSPARRKLIPKAGKPGQFRPLGIPTI 118

Query: 95  EDKVLQPSVRSVLEPIYEEDFKEFSYGFRPNRSCHHAIEYM---------FEKVSYGRMR 145
            D+V+Q + + +LEPI+E  F   SYGFRP R+ H A+EY+          E     R+ 
Sbjct: 119 RDRVVQGAAKILLEPIFEAQFWHVSYGFRPGRNTHGALEYIRRAALPQKRDEDTRRNRLP 178

Query: 146 Y--IIDADIQDYFGSIDHGLLRVFLDRRVKDGVVRKMLDKWLKAGILEDKQLHYPKGGTP 203
           Y  +I+ DI+  F +I+H  L   + +R+ D  V +++  +LKAG+L + Q      GTP
Sbjct: 179 YPWVIEGDIKGCFDNINHHHLLERMRKRIGDRRVVRLVGLFLKAGVLTEDQFLRTDAGTP 238

Query: 204 QGGIVSPILSNIYLHYV---LDEWFSDKIQPLLTGKS---------------------FM 239
           QGGI+SP+L+NI L  +    + W   + +     KS                       
Sbjct: 239 QGGIISPLLANIALSAIEERYERWTYHRKKTQARRKSNGVAAAASARDSDRIAGRCVYLP 298

Query: 240 VRYADDFVM----GFEKGEDAKRVMAVLDKRFTKYGLRLHPEKTKVIDLNTNIRGERSFD 295
           VRYADDFV+      E+    K  +A  D      GL L PEKTKV  +         F+
Sbjct: 299 VRYADDFVVLVSGSLEEAMAEKSALA--DYLIKTTGLTLLPEKTKVTAMT------EGFE 350

Query: 296 FLGF 299
           FLGF
Sbjct: 351 FLGF 354