Pairwise Alignments

Query, 466 a.a., Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 511 a.a., ATP-dependent DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  114 bits (284), Expect = 1e-29
 Identities = 107/390 (27%), Positives = 180/390 (46%), Gaps = 54/390 (13%)

Query: 3   LIDQIQKGESKTLELKESLPKNESIAKTIVAFSNTSGGKLIIGVNDQLSIV-GIDDSMLF 61
           ++ QI+ GE   ++ KE +     IA  +VAFSN+ GGKL++G+ D+      +  S + 
Sbjct: 5   ILKQIKAGEVSGVQFKERILDKYDIACELVAFSNSHGGKLVVGIKDKTGETNALSYSEVQ 64

Query: 62  EIQDKIASIISDSCFPGIIPDIYSVNIENKLVLVIEVVRGNQKPYFLKSRGREVGSYVRI 121
           E  + ++ I S++  P I+  I +V +E+  ++V  V  G  KPY       +   +V+ 
Sbjct: 65  ETTNLLSDIASENVVPSILIKIDTVEVEDGNLVVATVKEGLNKPY----HDNKGIVWVKN 120

Query: 122 GATNR-LADSSTIAELERQKHHISYDEEVYYDLELNKLDLSPL-----------IDIFKQ 169
           GA  R + D++ +AE+       + DE    D  +N LD + +           +D    
Sbjct: 121 GADKRKVFDNAELAEMMTDCGSFAPDEAGVRDATVNDLDATTIKQFLGNRFERVLDKKGL 180

Query: 170 VGNPLNNEKLE-----------------NLKLIKTSNDKIYPSNALMVILGK-----LPH 207
            G+  N   L+                 NL+ I+        + A M++ GK     +P 
Sbjct: 181 TGDAFNEASLDMICSAIAKGHDCEKILRNLRFIRPDGTL---TVAAMLLFGKYTQRWMPM 237

Query: 208 CTIKCARFKGTTM--ETFIDK---KEYSGDIFTALENTQNFV---LNHINLQAEIKGLYR 259
            T KC  F G ++  + F DK    +  G++    +   +F    L+++ +  E   +  
Sbjct: 238 MTAKCICFAGNSVGSKVFRDKVNDADMEGNLLHQYDTIMDFFTRNLHNVQVGDEFNSM-- 295

Query: 260 DEKYEIPVVALREALVKAIIHRDYVNQGRDIKVGIYDDIVNIVSPGSLPNNITMDDIFNG 319
             K EIP  +L E  V +++HR  +N    +++ I+D+ V I SPG+LPN +T+DDI  G
Sbjct: 296 -GKLEIPYTSLVEFTVNSLVHRS-LNMKAPVRIFIFDNRVEIHSPGALPNGLTIDDIKAG 353

Query: 320 RSEVRNRVLANVFKELGLIEQWGSGINRII 349
            S  RN  L N    L      GSGI R +
Sbjct: 354 TSMPRNTFLFNNAIYLLPYTGVGSGITRAL 383