Pairwise Alignments

Query, 368 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 385 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas fluorescens FW300-N2E2

 Score =  166 bits (420), Expect = 1e-45
 Identities = 110/366 (30%), Positives = 192/366 (52%), Gaps = 24/366 (6%)

Query: 7   IIFVVGVAGVVSSCGSEANTQAGQGQQVISVHATSVTSKHVTGLDLYPGTVVPLNEIEIR 66
           ++  + +A ++S C  E    A    QV  V   ++ ++  T     PG        E+R
Sbjct: 10  LVTAIALASLLSGCKKEEAAPAPPPPQVGVV---TLKTQPFTLTSELPGRTSAFRVAEVR 66

Query: 67  PQVSGYINKIFVEDGQEVAKGQKLYEIDRSKYQAAYEQAQATLKSAKANLERVKKDLARY 126
           PQV+G I K   ++G +V  GQ+LY+ID + Y       +ATLKSA+ANL   K    RY
Sbjct: 67  PQVNGIILKRLFKEGADVKAGQQLYQIDPAVY-------EATLKSAEANLRSTKSIADRY 119

Query: 127 EALDKQEAIAKQQLDYAKADILTAESQVSSAEAQVRSTLTDYNYSVITAPFSGTVGISQV 186
           + L  ++A+++Q+ D A A+ L +E+ + +A+  VR       Y+ + AP SG +G S V
Sbjct: 120 KQLVDEQAVSRQEYDTAVANRLESEANLQTAQINVR-------YTKVYAPISGRIGRSSV 172

Query: 187 RLGAQVSAGQS-LLNTLSSNDPVLVDFVVNERDVRRFSKMMKNESLPD-----STFTIQF 240
             GA VS GQ+  L T+   DP+ VD   +  ++ +  + +++  L       +   +  
Sbjct: 173 TEGALVSNGQTDALATIQQLDPIYVDVTQSSVELLQLRRELESGRLQKAGDNAAMVKLTL 232

Query: 241 GENDVYRHHGELTTIDRAVGRQSGTINMRVEFPNPDRELIPGMTLNLRVLNQDIGDQIAI 300
            +  +Y H G+L   + +V + +G++ +R  FPNPD  L+PGM ++ ++        I  
Sbjct: 233 EDGSLYPHEGKLEFSEVSVDQTTGSVTLRAVFPNPDHTLLPGMFVHAQLQAGVNSAAILA 292

Query: 301 PFKAVTEQM-GEYFVYVVGDDSVVHQQNVQLGTKVGAEIVVREGLKPGQKIVVEGIQKLR 359
           P + VT  + G     VVG D+ V  + ++    VG++ ++ +GLK G +++ EG+Q +R
Sbjct: 293 PQQGVTRDLKGTPTALVVGADNKVELRQLKASRTVGSQWLIEDGLKAGDRVITEGLQFVR 352

Query: 360 EGAKVQ 365
            G +V+
Sbjct: 353 PGVEVK 358