Pairwise Alignments

Query, 368 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  165 bits (417), Expect = 2e-45
 Identities = 111/330 (33%), Positives = 182/330 (55%), Gaps = 24/330 (7%)

Query: 35  ISVHATSVTSKHVTGLDLYPGTVVPLNEIEIRPQVSGYINKIFVEDGQEVAKGQKLYEID 94
           ISV   SV S+ ++      G +     ++I  +V+G ++ I V+  Q+V KGQ L ++D
Sbjct: 32  ISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIKLD 91

Query: 95  RSKYQAAYEQAQATLKSAKANLERVKKDLARYEALDKQEAIAKQQLDYAKADILTAESQV 154
             K       AQA L  AKA L+  ++ L  YE L K+ AI   ++D  +A +   ++++
Sbjct: 92  DDK-------AQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARL 144

Query: 155 SSAEAQVRSTLTDYNYSVITAPFSGTVGISQVRLGAQVSAGQSLLNTLSSNDPVLVDFVV 214
           ++A+A     L D +   ITAPF GTVG      G  VSAG  LL TL +   + +D  +
Sbjct: 145 NAAQAN----LADLH---ITAPFDGTVGFIDFSRGKWVSAGSELL-TLDNLSLMRLDLQI 196

Query: 215 NERDVRRFSKMMKNESLPDSTFTIQFGENDVYRHHGELTTIDRAVGRQSGTINMRVEFPN 274
            ER + + SK MK +   ++   +QF         G +  +D  + +++  + +RV FPN
Sbjct: 197 PERYLPQLSKGMKVQGSSEAWPNVQF--------EGSVVAVDSRINQETLNLRVRVHFPN 248

Query: 275 PDRELIPGMTLNLRVLNQDIGDQIAIPFKAVTEQMGEYFVYVVGDDSVVHQQNVQLGTKV 334
           PD+ L PGM ++ R+    I   I IP +A+     + FVYV+G+D+V  ++ V LG +V
Sbjct: 249 PDQRLKPGMLMSARIHFPAISAPI-IPVQALEYSGTKRFVYVIGEDNVAKRREVSLGARV 307

Query: 335 GAEIVVREGLKPGQKIVVEGIQKLREGAKV 364
             ++V+ +GL+ G+KIVV+GI  +R+ A+V
Sbjct: 308 ENQVVIEKGLQIGEKIVVQGIVNMRDNARV 337



 Score = 23.5 bits (49), Expect = 0.009
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 185 QVRLGAQVSAGQSLLNTLSSNDPVLVDFVVNERDVRRFSKM 225
           +V LGA+V     +   L   + ++V  +VN RD  R S++
Sbjct: 300 EVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSEV 340