Pairwise Alignments

Query, 435 a.a., ATPases of the AAA+ class from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score = 84.0 bits (206), Expect = 2e-20
 Identities = 69/236 (29%), Positives = 114/236 (48%), Gaps = 18/236 (7%)

Query: 185 LDWEDLVLNSKTLNQIQEIEEWLKYEQVLMHDWGMHKRIKPGYRVMFFGPPGTGKTLTAG 244
           + W D+         ++E  EW    + +    G    I+P   V+ FGPPGTGKTL A 
Sbjct: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMG----IRPPKGVLLFGPPGTGKTLLAK 559

Query: 245 LLGKYTQKQVYRIDLSLVTSKYIGETEKNLSSLFDKAAN-KDWILFFDEADAIFGKR--- 300
            +   ++     +    + SK++GE+EK +  +F KA      ++FFDE D++  KR   
Sbjct: 560 AVANESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMD 619

Query: 301 TNVRDAHDKYANQEVSYLLQRIEQHPGLVILASNFKSNIDMAFTR--RFQNIIEFPLPVA 358
                  +K  NQ ++ L    E    ++I A+N    +D A  R  R   I+  P+P  
Sbjct: 620 FGSSGVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNE 679

Query: 359 AERLILWE---KNIPPKAKLAKDLDLSVFAKKYE-LTGANIVNVIQYASLKALSKN 410
             RL +++   K +P    + KD++L   AK+ +  TGA+I  V + A++ AL +N
Sbjct: 680 TARLEIFKVHTKGMP----IGKDVNLEKLAKETKGYTGADIEAVCREAAMIALREN 731



 Score = 76.6 bits (187), Expect = 3e-18
 Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 2/125 (1%)

Query: 223 IKPGYRVMFFGPPGTGKTLTAGLLGKYTQKQVYRIDLSLVTSKYIGETEKNLSSLFDKA- 281
           I+P   V+  GPPGTGKTL A  +        Y I+   + SKY+GETE+NL  +F++A 
Sbjct: 208 IEPPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAE 267

Query: 282 ANKDWILFFDEADAIFGKRTNVRDAHDKYANQEVSYLLQRIEQHPGLVIL-ASNFKSNID 340
            N   I+F DE DA+  KR       ++    ++  L+  +E    LVIL A+N   +ID
Sbjct: 268 ENSPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLMDGLESRGQLVILAATNRPDSID 327

Query: 341 MAFTR 345
           MA  R
Sbjct: 328 MALRR 332