Pairwise Alignments

Query, 876 a.a., Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 761 a.a., DNA topoisomerase IV subunit A from Vibrio cholerae E7946 ATCC 55056

 Score =  178 bits (451), Expect = 1e-48
 Identities = 141/476 (29%), Positives = 249/476 (52%), Gaps = 47/476 (9%)

Query: 18  DSVPVTGMYQEWFLDYASYVILERAVPAIEDGFKPVQRRILHAMKEMD---DGRFNKVAN 74
           + +P+    ++ +L+Y+ YVI++RA+P I DG KPVQRRI++AM E+      ++ K A 
Sbjct: 11  EQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSAR 70

Query: 75  IIGQTM-QYHPHGDASISDAIVNLGQ----KDLLIETQGNWGDIRTGDGAAAARYIEARL 129
            +G  + +YHPHGD++  +A+V + Q    +  L++ QGNWG        AA RY EA+L
Sbjct: 71  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKL 130

Query: 130 SKFALEVVFNPQ---TTDWQVSYDGRKREPVTLPVKFPLLLAQGVEGIAVGLSTKILPHN 186
           SKFA E++ +     T DWQ ++DG  +EP  LP + P +L  GV GIAVG++T I PHN
Sbjct: 131 SKFA-EILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHN 189

Query: 187 FCELINASVDVLKGKKANIV--------PDFPTGG--LADFSEYNEGLRGGK--IKVRAR 234
             E+ +A++ ++    A +         PDFPT    +    E  +  R G+  IK+RA 
Sbjct: 190 VREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRA- 248

Query: 235 IEEGDGKSLLIKDIPFGTTTTSLIDSIIKANDKGKI-KIKKVVDNTAKDVEIQVFLAPGQ 293
           +   +G  ++I  +P   +   L++ I       K+  ++ + D +  +   ++ + P  
Sbjct: 249 VWCKEGSDIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRS 308

Query: 294 SP---DMTIDALYAFTDCEQSISPNACVI-IDDKPVFMGVNDILAYNTTQTKALLKRELE 349
           +    D+ ++ L+A TD E+S   N  +I +D++P   G+  IL+   +  +  ++  L+
Sbjct: 309 NRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRETVRSRLQ 368

Query: 350 IRKGELMEKLLFSSLEKIFIENRIYRDIEECETWEDVIDTIDKGLDPHKPDFYR-EITKD 408
            R  +++ +L    L+ + I    Y +++E      VI+ I    DP      R ++T  
Sbjct: 369 YRLDKVLARL--HILQGLLI---AYLNLDE------VIEIIRNEDDPKAVLMARFDLTDI 417

Query: 409 DIIRLTEIKIKRISRFDSFKADELMRKLEDELKEVEYNLEHLTEFAIDYYKNLLKK 464
               + + K++ +++ +  K    +R  +DEL++    LE L   +     NLLKK
Sbjct: 418 QADAILDTKLRHLAKLEEMK----IRGEQDELEKERKKLEELLG-SERRLNNLLKK 468