Pairwise Alignments

Query, 693 a.a., Topoisomerase IA from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 870 a.a., DNA topoisomerase I from Pseudomonas syringae pv. syringae B728a

 Score =  112 bits (281), Expect = 6e-29
 Identities = 130/523 (24%), Positives = 218/523 (41%), Gaps = 90/523 (17%)

Query: 87  GAIKQLKIIEQLFNRSDGIIVATDAGREGELIFRYIYEYLKCIKP-FQRLWISSLTEKAI 145
           G  K ++ + +L   +D I +ATD  REGE I  ++ E +      ++R+  + +T+KAI
Sbjct: 95  GKEKVIEELRKLAKDADIIYLATDLDREGEAIAWHLREAIGGDDSRYKRVVFNEITKKAI 154

Query: 146 KQGFDNLKDGKEFDGLYQAAQGRSRADWLVGINATQALSIAAGNGVYSLGRVQTPTLALI 205
           ++ F   K G+       A Q R   D +VG   +  L      G+ S GRVQ+  + L+
Sbjct: 155 QEAFS--KPGELDIARVNAQQARRFLDRVVGYMVSPLLWQKVARGL-SAGRVQSVAVKLV 211

Query: 206 CRRYLENKNFSVQKYWQIQ--LSHTKEF-IEFKSLSKN----KWDNQKLAKDTLKSIERN 258
             R  E + F+ ++YW+I   L   K   + F+   +N    K  N+  A   L+ ++  
Sbjct: 212 VEREREIRAFNPEEYWEIHADLGTAKGANVRFEVARENGEAFKPLNETQAMAALEKLK-- 269

Query: 259 GNTAAVTSVETKNVTEQPPLLFDLTGLQKEVNKKLNLSAEETLKIAQSLYEKKFITYPRT 318
            ++ ++   E K  + +P   F  + LQ+  + +L    ++T+ +AQ LYE  +ITY RT
Sbjct: 270 ASSYSIVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRT 329

Query: 319 ---------------------GSKYIPEDMWTEIPNLIRALQDRDTCKQAVAKVKWGRFN 357
                                G KY+PE      PN+  + +      +A+         
Sbjct: 330 DSTNLSADAVSMARDYIGTEFGKKYLPES-----PNVYSSKEGAQEAHEAI--------- 375

Query: 358 KRIVNDLRVTDHHGLLTTDTIPSALNAKE---NAVYDMIAFRLLEAISGACTKEATHITL 414
                  R +D       +T PS L   E     +Y++I  + +          +T +T+
Sbjct: 376 -------RPSD------VNTHPSKLTGMERDAERLYELIWRQFVACQMLPAQYLSTTVTV 422

Query: 415 QALHYDFTTKGCKVLEPGWRSIKGNFT---DDDAEPIEDLPDIKEGDVLKIKQAAVLEKK 471
            A  ++   KG  +   G+           DDD      LPD+ +G+ LK+ +    +  
Sbjct: 423 AASDFELRAKGRILKFDGYTRALPQMAKPGDDDV-----LPDMAQGETLKLNKLDPSQHF 477

Query: 472 TKPPVLYTEAGLLSAMETAGKDIKNEEERKALQNIGIGTPATRAAIIETLFTRNYIQREK 531
           TKPP  Y+EA L+  ME                  GIG P+T AAII T+  R Y+    
Sbjct: 478 TKPPARYSEASLVKEMEKR----------------GIGRPSTYAAIISTIQDRGYVALHN 521

Query: 532 KSLIPTEKGLQVYELVKD--RKIADVAMTAEWELALQKIETSE 572
           +     + G  V   + +    + D   TA  E  L  +   E
Sbjct: 522 RRFYSEKMGDIVTGRLSESFSNLMDYGFTAGMEENLDDVAQGE 564