Pairwise Alignments

Query, 652 a.a., DNA gyrase, B subunit from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 832 a.a., DNA gyrase subunit B from Herbaspirillum seropedicae SmR1

 Score =  583 bits (1502), Expect = e-170
 Identities = 312/602 (51%), Positives = 405/602 (67%), Gaps = 38/602 (6%)

Query: 1   MSKEQASNLGE----YSAGNIQILEGLEAVRKRPAMYIGDVGV-KGLHHLIWEVVDNSID 55
           MS   A N       Y A +IQILEGLEAVRKRP MYIGD     GLHHL++EV+DNSID
Sbjct: 1   MSTSPADNTNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60

Query: 56  EALAGHCDTIHVTVLEDNSVQVEDNGRGIPT-----DMHEKEKRSALEVVMTVLHAGGKF 110
           EALAG+C  IHVT+  DNS+ + DNGRGIPT     D HE  KRSA E+VMT LHAGGKF
Sbjct: 61  EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEP-KRSAAEIVMTELHAGGKF 119

Query: 111 DKDTYKVSGGLHGVGVSCVNALSTHLKATVYRNGKVFEQEYSRGVPQTGVTE-------- 162
           D+++YKVSGGLHGVGVSCVNALS  LK T+ R+GKV   E+++G+ Q    E        
Sbjct: 120 DQNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVS 179

Query: 163 ----IGETEKRGTIIHFVPDGDIFTVTEYKYETIANRLREMAFLNAGVRIFFKDMRELDE 218
               IGE++KRGT +HF  D +IFT  E+ YE +A R+RE++FLN GV I   D R    
Sbjct: 180 PIKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQR---- 235

Query: 219 EGNPKSDEFFSEGGLIEFVEYLDETREKIIQEPIYIESEKNA-----VPVQVAMSYNSSF 273
               K ++F  EGG   FVEY+++ +  +         EK +     + V V+M +N +F
Sbjct: 236 --TGKEEDFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAF 293

Query: 274 SENVVSYVNTINTYEGGTHVSGFRRALTRTLKGYADKSGMLDKVKFDVSGDDFREGLTAV 333
           +E V+ + N I   +GGTH++G R A+TR +  Y +++ +  K K ++SGDD REGLT V
Sbjct: 294 NEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCV 353

Query: 334 ISVKVAEPQFEGQTKTKLGNSEVVSAVDSAVSEVLQYWLEEHPKEAKIIVGKVVLAAQAR 393
           +SVKV EP+F  QTK KL +SEV   V+  V++ L  +L E P +AKII GK+V AA+AR
Sbjct: 354 LSVKVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAR 413

Query: 394 HAARKAREMVQRKNVLGGGGLPGKLADCANTNPEVCELYLVEGDSAGGSAKQGRDRDFQA 453
            AARKARE+ +RK V+ G GL  KLADC   +P +CELY+VEGDSAGGSAKQGRDR FQA
Sbjct: 414 EAARKARELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQA 473

Query: 454 ILPLKGKILNVEKAHEHKIYDNDEIKNILTALGVKFGTAEDEKELDLTNLRYHKIVIMTD 513
           ILPL+GK+LNVEKA   K+  +++I  ++  LG   G      E +   LRYH+I+IMTD
Sbjct: 474 ILPLRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGA----DEFNPDKLRYHRIIIMTD 529

Query: 514 ADIDGSHIRTLILTLFFRYMRSLIENGYVYIALPPLYLLKKGKDERYCWSEDERIKLTKE 573
           AD+DG+HIRTL+LTLF+R M +L+E G++YIA PPLY +K GKDERY   + E  +   +
Sbjct: 530 ADVDGAHIRTLLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQ 589

Query: 574 MA 575
           +A
Sbjct: 590 IA 591



 Score = 87.8 bits (216), Expect = 2e-21
 Identities = 44/66 (66%), Positives = 47/66 (71%)

Query: 583 VGIQRYKGLGEMNPEQLWTTTMDPESRTLKQVTIESAAEADHLFSMLMGDEVAPRREFIE 642
           V  QRYKGLGEMNPEQLW TTMDP  R L +V IE A  AD +F  LMGD+V PRR FIE
Sbjct: 762 VNKQRYKGLGEMNPEQLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIE 821

Query: 643 KNAKYA 648
            NA  A
Sbjct: 822 SNALQA 827