Pairwise Alignments

Query, 350 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 186 a.a., RNA polymerase subunit sigma-24 from Pedobacter sp. GW460-11-11-14-LB5

 Score = 57.8 bits (138), Expect = 2e-13
 Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 16/150 (10%)

Query: 72  LFTYAYNILGAAMEAEDVVQDVFEKFLT--LDTNTIQNEKAYLIRMVINQAIN--RKKQL 127
           ++  A  IL    EAEDV+Q+ F    T  +D         +L ++VIN++IN  RK+++
Sbjct: 36  MYNVALRILNYEEEAEDVLQEAFLDAFTRIVDFRQETTFGLWLKQIVINKSINYLRKRKM 95

Query: 128 NRSLLHYPNDWLPEPVITNMDTERLEDEH---ILSYSMMLLLEQLEPGPRAVFLLKESFG 184
                    +++    I+ +  E   D+H   + +  +   + QL  G R V  L    G
Sbjct: 96  ---------EFVSTDEISEVPDEDSFDDHEVQLQAEEIRTAITQLPDGYRVVLSLYLLEG 146

Query: 185 YSHKAISQTLDISQETSRQQLSRAKKKLRN 214
           Y H+ I+  L IS+ TSR Q  RAKKKL++
Sbjct: 147 YDHEEIAHILKISENTSRTQYMRAKKKLKS 176