Pairwise Alignments

Query, 350 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 189 a.a., RNA polymerase sigma factor from Pedobacter sp. GW460-11-11-14-LB5

 Score = 52.8 bits (125), Expect = 7e-12
 Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 11/134 (8%)

Query: 84  MEAEDVVQ----DVFEKFLTLDTNTIQNEKAYLIRMVINQAINRKKQLNRSLLHYPNDWL 139
           MEAEDV+Q     +F+K      +   + + ++ R+++N AI   ++  RSL     D  
Sbjct: 47  MEAEDVLQMGYIKIFQKIKEYRGDG--SFEGWIRRVMVNTAIESYRKNLRSLNVVEIDEA 104

Query: 140 PEPVITNMDTERLEDEHILSYSMMLLLEQLEPGPRAVFLLKESFGYSHKAISQTLDISQE 199
            E   T  D   L  +      +M ++++L  G R VF +    GYSHK I +TL IS+ 
Sbjct: 105 YEQPSTGFDFGTLGMQ-----DLMKVIQKLADGYRMVFNMYVIEGYSHKEIGETLGISEG 159

Query: 200 TSRQQLSRAKKKLR 213
            S+ QLSRA+  L+
Sbjct: 160 ASKSQLSRARAILK 173