Pairwise Alignments

Query, 350 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 191 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 55.8 bits (133), Expect = 8e-13
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 27/173 (15%)

Query: 68  FRPLLFTYAYNILGAAMEAEDVVQDVFEKFLTLDTNTIQ--NEKAYLIRMVINQAINRKK 125
           FRPL + +AY  +G   +A D+V D+FE FL    N ++  N  AYL   + N+    K 
Sbjct: 32  FRPL-YVHAYKKIGTDEDAIDIVHDLFE-FLWTKRNELEISNLSAYLFAAIRNRIFTLKV 89

Query: 126 QLNRSLLHYPN--DWLPEPVITNMDTERLEDEHILSYSMMLLLEQ----LEPGPRAVFLL 179
           + +R  ++  +  D++ +        E + D  +    +  L+E+    L P  + VF++
Sbjct: 90  RSDRKNIYLESLKDFINKG-------EFVTDAQVRERELAALIEREIDALPPQMKKVFVM 142

Query: 180 KESFGYSHKAISQTLDISQETSRQQLSRAKKKLRNTTSPQVIEPNREGVEAYL 232
             + G SHK I+  L  S+ T R Q+ ++ + LR          +R G+ AYL
Sbjct: 143 SRTDGMSHKEIADQLGTSEHTVRTQVKKSLRILR----------SRIGIVAYL 185