Pairwise Alignments

Query, 350 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 188 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 55.5 bits (132), Expect = 1e-12
 Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 72  LFTYAYNILGAAMEAEDVVQDVFEKFLTL-DTNTIQNE-KAYLIRMVINQAINRKKQLNR 129
           L  +A  +L    +A+DVVQDVF       DT  IQ+  K +L     N+ +N  K+   
Sbjct: 35  LLLHAERMLNDEQQAQDVVQDVFVMLWEKRDTLIIQSSIKGFLYAATRNRILNVFKKEKV 94

Query: 130 SLLHYPNDWLPEPVITNMDTERLEDEHILSYSMMLLLEQLEPGPRAVFLLKESFGYSHKA 189
              H+ N          + T+ L  E  L   +   +E+L P  R VFLLK     S+K 
Sbjct: 95  KANHF-NTLANSEESETIQTDYLIREKELEALIESEIEKLPPKMRTVFLLKRKDQLSYKE 153

Query: 190 ISQTLDISQETSRQQLSRAKKKLR 213
           IS TL IS  T + Q+++A K LR
Sbjct: 154 ISTTLGISDLTVKTQMNKAIKILR 177