Pairwise Alignments

Query, 350 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 194 a.a., RNA polymerase subunit sigma-70 from Pedobacter sp. GW460-11-11-14-LB5

 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 18/177 (10%)

Query: 46  LAWRISYPPQFAVKPTYHPMERFRPLLFTYAYNILGAAMEAEDVVQDVFEKFLT--LDTN 103
           LA+ ++   + A    Y+   RF  LLF +A   L    EA+DV+  +FE      L   
Sbjct: 12  LAFLLTQGDELAFTEIYN---RFYGLLFIHASRRLNDEEEAKDVLHQLFESLWVKRLQVA 68

Query: 104 TIQNEKAYLIRMVINQAIN--RKKQLNRSLLHYPNDWLPEPVITNMDTERLEDEHILSYS 161
              N  AYL   V N+ ++    +++    +    D++ +  ++        D  +    
Sbjct: 69  PDGNLSAYLYTAVRNRVLDVFAHQKVESKYVDSLQDYIDQDHVST-------DYRVREKQ 121

Query: 162 MMLLLEQ----LEPGPRAVFLLKESFGYSHKAISQTLDISQETSRQQLSRAKKKLRN 214
           M LL+EQ    L P  R +F+L      SHK I+  L +S+ T + Q+ +A + L++
Sbjct: 122 MALLIEQEIDALPPKMREIFILSRKENKSHKEIALELGLSELTVKTQVKKALRILKS 178