Pairwise Alignments

Query, 350 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 190 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 46.2 bits (108), Expect = 7e-10
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 3/149 (2%)

Query: 66  ERFRPLLFTYAYNILGAAMEAEDVVQDVFEKFLTLDTNT-IQNEKAYLIRMVINQAINRK 124
           +R+   +F  AY  +     A+D+ QD+F +    D ++ I+N  AYL   V NQ+    
Sbjct: 31  DRYWKQVFNAAYKQIKDISSAQDITQDIFTQLWLRDKDSKIENLSAYLFTAVRNQSYKLM 90

Query: 125 KQLNRSLLHYPNDWLPEPVITNMDTERLEDEHILSYSMMLLLEQLEPGPRAVFLLKESFG 184
            +  RS          E      D + L  E + +Y    L++ L    + +F  + + G
Sbjct: 91  AKQKRSSPILDVLMESEVSCYQADDQILYKEFLCAYE--ALIDNLPEQQKIIFKKRFNQG 148

Query: 185 YSHKAISQTLDISQETSRQQLSRAKKKLR 213
            +   IS  L +S +T R  L RA  KL+
Sbjct: 149 LNTLEISTQLCLSPKTVRNHLGRALAKLK 177