Pairwise Alignments

Query, 350 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 285 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

 Score =  135 bits (340), Expect = 1e-36
 Identities = 92/275 (33%), Positives = 138/275 (50%), Gaps = 11/275 (4%)

Query: 69  RPLLFTYAYNILGAAMEAEDVVQDVFEKFLTLDTNTIQNEKAYLIRMVINQAINRKKQLN 128
           RP L   AY +LG+  +AED VQ+ F +++  D   ++  +A+L R V    +++ K   
Sbjct: 17  RPKLIRVAYRMLGSVADAEDAVQEAFVRWMGTDRGAVREPEAFLRRTVTRLCLDQLKSAR 76

Query: 129 RSLLHYPNDWLPEPVITNMDTERLEDEHILSYSMMLLLEQLEPGPRAVFLLKESFGYSHK 188
                Y   WLP+PV+        E E  ++  +ML LE+L P  RA FLL + FG S +
Sbjct: 77  HQRETYIGPWLPDPVVEE------EPEEDVTLPLMLALERLSPLERAAFLLHDVFGVSFE 130

Query: 189 AISQTLDISQETSRQQLSRAKKKLRNTTSPQVIEPNR--EGVEAYLKAIKNADAKALEEL 246
            I+ TLD      RQ  +RA+  +R       +E  R  E  EA+  A +  D  AL  +
Sbjct: 131 EIATTLDRDAPACRQLAARARTHVREARPRFAVEQKRGLEIAEAFFNASRTGDMAALGTM 190

Query: 247 LLEDISLTSDGGGKVPAGTKLVQGTHRVVAMLQGLFRKFYQEINLLPTT--VNHSPAILY 304
           L  D+S+ SDGGGK  A  +LV G   V+ + + L   F +  + L  T  VN  P  + 
Sbjct: 191 LAADVSMHSDGGGKRAAAMQLVLGFKHVMKLHKSLAVLFGKYGSKLVRTGFVNGLPGFVT 250

Query: 305 LTPAGEVTNCQVFVFENRKIARIFFIRNPEKLLFL 339
           L   GE+    + + + R +A I+  RNP+KL  L
Sbjct: 251 LESDGEIQTTALEIEDGRVVA-IYVTRNPDKLQHL 284