Pairwise Alignments

Query, 350 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 324 a.a., RNA polymerase subunit sigma-24 from Herbaspirillum seropedicae SmR1

 Score =  131 bits (329), Expect = 3e-35
 Identities = 87/307 (28%), Positives = 155/307 (50%), Gaps = 34/307 (11%)

Query: 69  RPLLFTYAYNILGAAMEAEDVVQDVFEKFLTLDTNTIQNEKAYLIRMVINQAINRKKQLN 128
           RP LF  AY +L +  EA+DV+QD + ++   D   + + +A+L+ +V    I+R +QL 
Sbjct: 14  RPRLFGVAYRMLASRSEADDVLQDAWLRWHAQDKAVLDSAEAWLVTVVTRLCIDRLRQLQ 73

Query: 129 RSLLHYPNDWLPEPVITNMD------------------TERLEDEHI-LSYSMMLLLEQL 169
           +   HY   WLPEP++   +                   E+L ++H  LS++ +LLLE L
Sbjct: 74  QERQHYVGHWLPEPLVDLAEPGPGPDIDLYGQARLAPSPEQLLEQHSDLSFAYLLLLEHL 133

Query: 170 EPGPRAVFLLKESFGYSHKAISQTLDISQETSRQQLSRAKKKL--------------RNT 215
           +P  RA FLL+E F   +  I+  L  S+ + RQ + RA+++L              R  
Sbjct: 134 KPEERAAFLLREVFDNDYPDIAAILQKSEASCRQLVHRARERLARQEHQADPRSPAVRAA 193

Query: 216 TSPQVIEPNREGVEAYLKAIKNADAKALEELLLEDISLTSDGGGKVPAGTKLVQGTHRVV 275
           +SP   E +   +E +++A+++   +A+  LL ED  L  DGGGKV +    ++G  R+ 
Sbjct: 194 SSPVTRETHALLLEKFMQALQSGQREAMLGLLAEDARLIGDGGGKVASFPHPLEGAERIS 253

Query: 276 AMLQGLFRKFYQEINLLPTTVNHSPAILYLTPAGEVTNCQVFVFENRKIARIFFIRNPEK 335
            +     R+F   I      +N +  +L     G + + Q   ++  +++ I+ +RNP+K
Sbjct: 254 WLYYANVRRFGTRIVYRAAWINGAAGLLRYVD-GVLESAQALQWQAGRVSAIYVVRNPDK 312

Query: 336 LLFLQKR 342
           L  + ++
Sbjct: 313 LAAIARQ 319