Pairwise Alignments

Query, 913 a.a., ABC-type sugar transport system, periplasmic component from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  145 bits (367), Expect = 2e-38
 Identities = 144/540 (26%), Positives = 260/540 (48%), Gaps = 56/540 (10%)

Query: 254  AVTDGILDATFLYPTGGDIAIEIAHKILS-DEQVVKENILQTAVVDSTNIRIMKQQTDKI 312
            AV++    A F   T G + ++I   IL  + Q  ++  L    + ST I  +    DK 
Sbjct: 900  AVSEAHFKALFDGATIGIVNVDIKGLILDCNYQFCEDMGLSRDELRSTPIFDVLSAQDKD 959

Query: 313  IDQQDNITRQKQRIDVQMEIYKNQRTFLFGFGLTLFVAI-----ISLAYVFKSLREKQEI 367
            + +     + K+ ++ +++ Y+ +R+F+   G  L++ +     +     F+S       
Sbjct: 960  VAK----AQFKELVEGKIDHYRGERSFVRPSGEPLWMTVNVSTLLDSQNQFESAVVSMVD 1015

Query: 368  NEELKNKNDEILQQKDKVLSLSKKAEEATQQKFDFFTNISHEFRTPLTLIQAPVEDLLAN 427
              ELK  +DE+L  KD+       A+ A++ K DF  N+SHE RTP+  I    +  L  
Sbjct: 1016 MTELKLLSDELLVAKDE-------ADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQT 1068

Query: 428  KDAAPFKPDLQLIRKNTMRLLRLVNQLMDLRKIDHAKMKVKAVEQELIPFLQDILNSF-D 486
            +     K  L+ I + +  LL ++N ++D  KI+  K+ ++ V  +L   L+D+ + F +
Sbjct: 1069 QLDKKQKNYLEKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSE 1128

Query: 487  KTAQKHDITLRLLADNRNLKVWYDPMMLDKVMFNLLSNAFKFTPIHGSVIVKVTEKPLSN 546
            + AQK    L  +A N    +  DP+ L +V+ NL++NA KFT   G V++ ++     N
Sbjct: 1129 RAAQKQIELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTE-RGEVLLSLSLVEQQN 1187

Query: 547  K-VCIR--VEDTGSGMSPEDTSHVFDRFYQGETYSA---AGSGIGLALSKELIELHHGEI 600
              V +R  V D+G G++ E  S +F  F Q +T +     G+G+GLA+SK+L+EL  G I
Sbjct: 1188 DDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSI 1247

Query: 601  CLESTLGKGTSFEVVLQMGKAHFNESEMLNGTATQYFSEENIGILEEVTPKISRDTQEEK 660
             +ES LG G++F          F   ++   +  + F    +G             QE  
Sbjct: 1248 GVESQLGHGSTF----------FFTVKLCISSGQKLF----VG-------------QELD 1280

Query: 661  EQTLLIIEDDQQIRQYLCQQL-SAHYNILEAENFEVGIAKALDKLPDLITCDLMLKQGSG 719
              ++L+ +D+   R  +   L S  +N+    + +  I +   +   +   D  +    G
Sbjct: 1281 GMSILVADDNATARDIMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLDG 1340

Query: 720  FDIIKKLKDDIRTSHIP-IIVITAKSSLDERIEGIKLGVDDYISKPFSFTLLLERIKTLL 778
             +  K++K   +T + P I++++A ++ D   +  +LG+  YISKP S + LL+ I   L
Sbjct: 1341 IETAKQIKQ--QTKNAPRILMVSAHANQDFLTQIEQLGLAGYISKPISASRLLDGIMNAL 1398



 Score = 45.8 bits (107), Expect = 2e-08
 Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 660  KEQTLLIIEDDQQIRQYLCQQLSAHYNILE-AENFEVGIAKALDKLPDLITCDLMLKQGS 718
            K + +L++ED++   +   + L     IL  A N ++ + K   +  DL+  D  +    
Sbjct: 1422 KGKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMD 1481

Query: 719  GFDIIKKLKDDIRTSHIPIIVITAKSSLDERIEGIKLGVDDYISKPFSFTLLLERI 774
            G+   K ++     + +P+I +TA +   ++   ++ G++D+I+KP    LL + +
Sbjct: 1482 GYQATKAIRQRPELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTL 1537