Pairwise Alignments

Query, 457 a.a., DNA repair nuclease with dnaQ and GIY-YIG domains (from data) from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 283 a.a., excinuclease Cho from Rahnella sp. WP5

 Score = 72.8 bits (177), Expect = 1e-17
 Identities = 74/273 (27%), Positives = 115/273 (42%), Gaps = 21/273 (7%)

Query: 180 EAFLPPNITKEQFLSLPESIGVYYFH-DANGKVIYVGKALNIRHRFKGHFSGAGKGKQGM 238
           E +  P   +    +LP   GVY F+ D N   +Y+GK++NIR R   HF    + K  +
Sbjct: 11  ELYQYPEHLRHTLENLPNGSGVYIFYGDDNAFPLYIGKSVNIRSRVMSHFRNPAEAK--L 68

Query: 239 KSAIYDVSFQLTGSEFLALLVEALEIKQHWPKYNRAQKAKNAPWGIYRYQDGQGFERFQV 298
                D+ F  T  E  ALL+E+  IK   P +N+  +       I R Q       F  
Sbjct: 69  LHMTRDIEFIETIGEVGALLLESDLIKTRRPLFNKRLRTARKLCSI-RLQGLTASIVFSD 127

Query: 299 AKINRFTKPLLA-FHSHHEAWSYLLEKIEKHQLCAKLCGVQKSAS--ACFDHQAGACLGA 355
                 ++ L   F +   A   + +  ++ +LC    G++K A   ACF    G C G 
Sbjct: 128 DVDFSHSEDLFGLFKTKMSAVEKIRDIADQEKLCYGALGLEKLAKNRACFRFSLGKCAGV 187

Query: 356 CCGEEEPSSYNTRVEDWLQEIQREK----SRLLIREKGRHPNEQAAI--YFEDGVLK--- 406
           CCG+E P  +  R+ + L  ++        R+ I E+     +   I  +F  G +K   
Sbjct: 188 CCGKETPDVHQARLRNALSTLKIRSWPYPGRIAIAEEANGLTDYHVINHWFYLGTVKTLE 247

Query: 407 -AYGFIDSEAEFDTDEAVIDQLEMVKPVGDTSS 438
            A  F  +   FD D   I    + KP+ +T S
Sbjct: 248 DAKAFDIAVPHFDRDSYKI----LCKPLFETES 276