Pairwise Alignments

Query, 457 a.a., DNA repair nuclease with dnaQ and GIY-YIG domains (from data) from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 204 a.a., DNA polymerase III, epsilon subunit (RefSeq) from Shewanella loihica PV-4

 Score = 90.5 bits (223), Expect = 4e-23
 Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 2/159 (1%)

Query: 5   IVDIETTG-GYGKRHRITEVAAVAHNGSQILDSFQTLINPDCEIPGFITGLTGIDQSMVE 63
           ++D ETTG    +  R  E+ AV      ++D FQ L+NP   +  FI   TGI  +M+ 
Sbjct: 8   VLDFETTGLSPLQGDRAIEIGAVKLQQGVVVDRFQQLMNPGFAVSSFIADYTGITNAMLS 67

Query: 64  GAPYFEDIADELYAFLEDKIFVAHNVNFDYQFIRSEFERIGKSFDRPKLCTVRLSRKIFP 123
            AP  E +  +   F++    VAHN +FD +F+ +EF RI     +P  C++ L+R++F 
Sbjct: 68  DAPSCETVMADFADFIQGCHLVAHNASFDQKFLTAEFARIDLEQSQPFACSLLLARRLFQ 127

Query: 124 GLRSYSLGRICEHKNIEIKS-RHRAFGDAEATAELFTKL 161
            + ++ LG +  +  I      HRA  DAE T  L+  L
Sbjct: 128 AVPNHQLGTLVNYLGIANDGVFHRALNDAEVTGALWLAL 166