Pairwise Alignments

Query, 568 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  124 bits (311), Expect = 3e-32
 Identities = 98/361 (27%), Positives = 183/361 (50%), Gaps = 31/361 (8%)

Query: 228  IGVFDVNWMPKYLSPSFE--QAFGFTRNQLMDPSFFEGFRSKVKDMEKV----VVDG-VK 280
            IG+ +V+     L  +++  +  G +R++L     F+   ++ KD+ K     +V+G + 
Sbjct: 915  IGIVNVDIKGLILDCNYQFCEDMGLSRDELRSTPIFDVLSAQDKDVAKAQFKELVEGKID 974

Query: 281  RYRFTN--LNSAGERIWLESIFDTLYDEDGEIQGHMAIMRNISEEVIGEQKMSEALEKEI 338
             YR     +  +GE +W+     TL D   + +  +  M +++E  +   ++  A ++  
Sbjct: 975  HYRGERSFVRPSGEPLWMTVNVSTLLDSQNQFESAVVSMVDMTELKLLSDELLVAKDEAD 1034

Query: 339  ALNKMKSQFISITSHEFKTPLSTIKSSIEICNIELQRQLQEHPSEQKFKKHFNRVNNEVD 398
            A +K K  F++  SHE +TP++ I    ++C   LQ QL     ++K K +  ++     
Sbjct: 1035 AASKAKGDFLANMSHEIRTPMNAIIGMSQLC---LQTQL-----DKKQKNYLEKIERASQ 1086

Query: 399  RMNSLLVNLLNLEKINQGVIQVSSKGKKINSYLRSVLEDWVDQDSVHFETTL-----PED 453
             + S++ ++L+  KI  G + + +   ++++ L   L D   + +   +  L     P  
Sbjct: 1087 SLLSIINDILDFSKIEAGKLDIENVSFQLDTMLED-LSDMFSERAAQKQIELLFAVAPNV 1145

Query: 454  FIHSI-DVSLMNQVITNLVENALKYGNRDEKV----IVKAHHTDRELVVSVRDFGDGIPE 508
              H + D   + QV+ NL+ NA+K+  R E +    +V+  + D  L  SVRD G G+ +
Sbjct: 1146 PRHLLGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQNDDVVLRFSVRDSGIGLTQ 1205

Query: 509  KEQEHLFKPFFRASNSS--KYDKGSGLGLMITKKFIELQNGTVHFESEEGVGTCFFLTFP 566
            ++Q  LFK F +A  S+  KY  G+GLGL I+K+ +EL  G++  ES+ G G+ FF T  
Sbjct: 1206 EQQSKLFKSFTQADTSTTRKYG-GTGLGLAISKQLVELMGGSIGVESQLGHGSTFFFTVK 1264

Query: 567  L 567
            L
Sbjct: 1265 L 1265