Pairwise Alignments

Query, 1428 a.a., DNA-directed DNA polymerase III (polc) from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

 Score =  702 bits (1813), Expect = 0.0
 Identities = 427/1205 (35%), Positives = 650/1205 (53%), Gaps = 85/1205 (7%)

Query: 242  DTPFSHLHVHTQYSILQATSEIPAMVARAKEFNMPAIAMTDHGNMMAAFHFVKAAMDNDI 301
            D  F HL +H+ +S++   S++P +V +     MPA+A+TD  N+     F   A +  +
Sbjct: 3    DPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGV 62

Query: 302  KPVVGCEFNICRDHQNKSQKDDGFQAVLLAKNKTGYHNLAKLASFAYTQGFY-YVPRIDK 360
            KP++G +F +    Q++   D+  +  LLAKN  GY NL  L S AY +G   + P IDK
Sbjct: 63   KPIIGADFTL----QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDK 118

Query: 361  ELLVQYKGDIIATTGGLWGEVPFLILNVGETQAEEAFVWWKEQFGEDFYVELNRHGIPEE 420
              LV++   +I  +GG  GEV   +L   + Q E    +++  F + FY+EL R G  +E
Sbjct: 119  AWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADE 178

Query: 421  EKVNEVLLRFAQKYDVKYFAANNTYYNTKNDAKAHDILLCVKDGEKVDKPKRYIGKKGRE 480
            E      L  A++YD+   A N   + T+   +AH+I + + DG  ++ P+R      ++
Sbjct: 179  ESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQ 238

Query: 481  FRYGFPNEEFYIKTPEEMKKLFADLPEAIECTNEIIEKVEPYKLAREVLLPKFNIPEQFQ 540
                      Y+++  EM +LFAD+PEA+  + EI ++        E  LP F       
Sbjct: 239  ----------YLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNF------- 281

Query: 541  DPQDDEDGGKRGENAYLRHLTYEGAKRRY------PEITEEIR----ERLDFELSIIANT 590
                   GG   E+ +L   + EG + R       PE+  + R    ERL  EL +I   
Sbjct: 282  -----PTGGMAIED-FLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQM 335

Query: 591  GYPGYFLIVQDFTTAAREMGVSVGPGRGSAAGSAVAYCIGITNVDPVAYDLLFERFLNPD 650
            G+PGYFLIV +F   +++  + VGPGRGS AGS VAY + IT++DP+ YDLLFERFLNP+
Sbjct: 336  GFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPE 395

Query: 651  RVSLPDIDIDFDDHGRQKVIDYVIEKYGANQVAQIITYGTMAAKSAIRDTARALDLPLSD 710
            RVS+PD D+DF    R +VID+V E YG + V+QIIT+GTMAAK+ IRD  R L  P   
Sbjct: 396  RVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGF 455

Query: 711  ADRLAKLVPDIKLKALFGLANDRGKLAEKLKNNSENIDKAYELINISKGNDDLSKTINQA 770
             DR++KLVP            D G   EK       + + Y+       ++++ + I++ 
Sbjct: 456  VDRISKLVPP-----------DPGMTLEKAFIAEPALQELYD------ADEEVKELIDKC 498

Query: 771  KILEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDMYCTQFDNSVVENAGLLKMDFLG 830
            +ILEG  RN G HA GV+I+P  IT+F P+    + +   TQFD + VE AGL+K DFLG
Sbjct: 499  RILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLG 558

Query: 831  LKTLTLIKDAVRIVKERHGIELDP----ENFPIDDKETYELFQRGETVGIFQYESPGMQK 886
            L+TLT+I  A+ +V  R      P    E  P+DD  ++   Q  +T  +FQ ES GM++
Sbjct: 559  LRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKE 618

Query: 887  YMRELKPTVFADLIAMNALYRPGPLE--YIPSFIKRKHGLEPIAY-----DLDDMEEYLQ 939
             ++ L+P  F D+IA+ AL+RPGPL+   + +FI RKHG E I+Y       + ++E L+
Sbjct: 619  LIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILE 678

Query: 940  ETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKLRDVLDKMKPKFVNQAAEKGHDK 999
             TYGI +YQEQVM ++Q L+G+T G AD+LR+AMGKK  + + K +  F   A + G D 
Sbjct: 679  PTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDG 738

Query: 1000 AKLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMASVLSNNMNDITQVT 1059
                KI+   E FA Y FNKSHS  YA V+YQT +LK HYPAE+MA+V++ +M++  +V 
Sbjct: 739  ELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVV 798

Query: 1060 FFMEECKRMGIEVLGPDVNESKDGFTVNQEGQIRFGLAAIKGAGGAAVHSVIEERAENGP 1119
              ++ECK MG+ VL PD+N     F V+  G I +G+ AIKG G   + +++E R + G 
Sbjct: 799  GLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGY 858

Query: 1120 YKSIFDFTQRVNLRSVNKKTLESLAMAGGFDCFPDHHRRQYLEAPENDATLIEKAVKYAQ 1179
            +K +FDF  R++L+ VNK+ +E L +AG  D    H               ++ AV+ A 
Sbjct: 859  FKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMAS--------VDDAVRAAS 910

Query: 1180 KKAQEAESSQVSLFGG-GSGMEVPMPSITPIEPFSQLQQLNIEKEVVGLYISGHPLDQFK 1238
            +  Q     Q  +FG      E      T +  + +  +L  E+E +GLY++GHP+D++ 
Sbjct: 911  QHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYL 970

Query: 1239 VEFDSFTNTPLSEFANTEALKTKGEIKAAGVVTSFAHRTTKNGNPFGTLTLEDYNGGHTF 1298
             E   +T+  L+E A T   +    +  AG+V +    TTK G   G +TL+D +G    
Sbjct: 971  KELTKYTSCRLNEAAPT---RRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEV 1027

Query: 1299 FLFGEDYIKYKEYFMTGWFLYVTGSVQGKRWNPDELEFKVGNIMLLNEVRGKMVKGLRLN 1358
             L+ E   +Y E+      L V+G V    +N   L+     +M L   R K  +GL ++
Sbjct: 1028 MLYSEALDRYAEWLEKDKILVVSGQVSFDDFN-GGLKMSAREVMDLGSAREKFARGLSIS 1086

Query: 1359 ISLDDLTLDLMERLEAITSKYKG---EAKLYINVTDVKERIAVDLRSTKFLIDPSQDMIK 1415
            I    +     ER   I   ++       +Y    D + R+ +    T++ + PS  ++ 
Sbjct: 1087 ILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTL---GTEWRVTPSDTLLD 1143

Query: 1416 ALEDI 1420
             L+ +
Sbjct: 1144 ELKQL 1148