Pairwise Alignments

Query, 1036 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1001 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  538 bits (1386), Expect = e-157
 Identities = 363/1054 (34%), Positives = 543/1054 (51%), Gaps = 91/1054 (8%)

Query: 7    IFFISCLLLLPMLSYAQNNEITGNVTLKSNGEPLPGVAVMIEGSGTGTITDVDGKYSIQA 66
            I F    +   + + AQ    +G V L +  EPL GV+V  +G+  G ITD+DG +++  
Sbjct: 15   ILFAILAVFFSLSASAQQFTASGQV-LDAQKEPLIGVSVQEKGTTNGAITDLDGNFTLTV 73

Query: 67   PSGSTLVFSLLGMKPQKVTISNQTNLNVQLEENLSALEEVVVVGYGVQKKSVVTGAISSV 126
             S +TL+FS +G K Q+   S Q  + V L+E+   LEEVVV+GYG  K+  VT AIS+V
Sbjct: 74   QSNATLIFSYVGYKSQEQKASRQ--MKVTLQEDNEVLEEVVVIGYGSVKRKDVTTAISTV 131

Query: 127  KASDLESMPINRVEQALQGRTSGLTIASSSGQPGSGATVRVRGLTTF-GNNDPLWVVDGV 185
               DL+  PI    QA+QG+ +G+++   SG PG   ++RVRG T+  G+NDPL+VVDGV
Sbjct: 132  STKDLDVRPIVSAGQAIQGKAAGISVIQPSGTPGGEMSIRVRGTTSMNGSNDPLYVVDGV 191

Query: 186  VVDNGGIGYLNQSDIESIEVLKDAASQAIYGARAAAGVILVTTKKGEAGKIRVNYNGYYG 245
             VDN  I +L+ +DIES+++LKDA+S +IYG+RAA GVIL+TTK G  GK +V+    +G
Sbjct: 192  PVDN--IKFLSPNDIESMQILKDASSASIYGSRAANGVILITTKAGATGKAKVSLTAQFG 249

Query: 246  TSAPAKKLDLLDASQYAMIRNEAATNAGNTAPFSNPASYGAGTDWQDLIFNNSAQRQNHE 305
             +  A K++ L+A+QY  +++E           S P      TDW D  +  + + QN++
Sbjct: 250  LNKVADKVESLNAAQYKELQDEIGL-------VSLPDGLPDRTDWFDETYK-TGKMQNYQ 301

Query: 306  LSISGGNEKSTFYTSFGYLDQEGIVASEISKYKRINFRLNSEHQLASWLKVGQNLGYAHD 365
            +++S GNEK  +Y S GYLD++GI+  +IS YKR NFR+N E+Q+ SWL V  N+ Y+  
Sbjct: 302  VAVSNGNEKMKYYLSAGYLDEKGIL--DISYYKRYNFRVNLENQIRSWLTVSANISYSDY 359

Query: 366  KSIGLGNTNSEFGGPLSSAINLDPMTPAIISDPNIAGQPPYST-NPVIRDAMGRPYGIST 424
             S G        GG + +  N   +  A+I+ P  A  P +   NP         YG+  
Sbjct: 360  TSNG--------GGAMGTGANRGGVVLAVINTPTYA--PIWDALNP--NQYYNNFYGVGN 407

Query: 425  IVAQEMTNPLAYTQTRLGNYSWSDNFV--GNVYAEAEPIKGLKLRSTLGAKLSYWGSESF 482
            I     TNPL        N    +  +  GNV     P   LK +STL        + +F
Sbjct: 408  I-----TNPLENMARAKNNKDKENRLLASGNVLLTLLP--ELKFKSTLTLDRRNAVNTTF 460

Query: 483  T-PIFYLNATTVSNQTNFTRNQNRRFDWNLENTISYSKAIDQHNFTVLLGQGAYLDNRGR 541
              PI          + +  RN N    +  +N  +Y+K   +H   V+ G  ++ D+   
Sbjct: 461  LDPISTAWGRNQYGEASDNRNMNTVLTF--DNVFTYNKNFKRHGLEVMAGS-SWTDSDYS 517

Query: 542  SATVTFFNVPANNFEDASLNFKVPNDQRNADGSEGAGHTVSSLFARANYNYTEKYLLEAL 601
            ++ +   +   +  +  +   K+  D      S+     + S F R  YN+  KYLL A 
Sbjct: 518  NSWINGSHYRNDLIQTLNAANKIAWDNTGTGASQWG---IMSFFGRVAYNFDSKYLLTAN 574

Query: 602  VRRDGSSRFGPNNRYGIFPSFSAGWVITQEAFWPTNPVVDFLKVRGGYGIVGNDN-IGDF 660
            +R DGSS+  P++R+G+FPSFSA W ++ E F      +D  K+RGG+G  GN + IGD+
Sbjct: 575  LRADGSSKLHPDHRWGVFPSFSAAWRVSSEKFMADLTWIDDFKIRGGWGQTGNQSGIGDY 634

Query: 661  AFLSTIGSGRNYTI-----GNTGSYVIGYSPNAPSN---PDLKWEETSQANIGFEAT-LF 711
            A+L     GR         G+T  Y       + +N    DL WE T+Q NIG + T L 
Sbjct: 635  AYLQRYNIGRIEWFKVAAEGDTTDYANAVPTISQANLRTSDLTWETTTQTNIGLDLTVLN 694

Query: 712  GDFNITFDWYKKVTKGILQNPRIPGYVGAISNPAANVADMENRGVELELGYRKML-GELE 770
            G      D+Y K TK +L N  +P    A ++ A N  +M N+G EL +  +    G   
Sbjct: 695  GRLTFNMDYYYKKTKNMLMNVSLPAGAAAATSIARNEGEMTNKGFELTISSKNFRGGAFT 754

Query: 771  LSLNGNISYLENEVTNLGTDISYLSGGQSFQASSYPITRTAVGQSMNSFYGFQTQGIFQT 830
               + NIS+  N++T L     Y     +   + Y + R   G+++  FYG+ + G+   
Sbjct: 755  WDTDFNISFNRNKLTKLELQKVYYDAKTADVVNDY-VVRNEPGRALGGFYGYISDGV--- 810

Query: 831  IEDVENYTNTDGEMIQPNAQPGDFIWADLNKDGQITEADRTFIGNPTPTWSYGFTANFQW 890
                             + + G+ ++ DL+ DG+I+ +DRT+IG+P P ++YG T  F W
Sbjct: 811  -----------------DPETGELMYRDLSGDGKISTSDRTYIGDPNPDFTYGLTNTFSW 853

Query: 891  NNFDLVFFGQGVAGNKIFQGLR---RLDISNANWQTEVLNRWTGPGTSNDYPRIVEGDPN 947
              F+L  F QG  GN IF   R          N  T+VLNRW  PG   + P+      N
Sbjct: 854  KGFNLSVFIQGSYGNDIFNASRIETEGMYDGKNQSTKVLNRWKIPGQITNVPK-----AN 908

Query: 948  KNFNNPSDFYLEDGDYFRIKTLQLGYTLPKNLISKVAMNRARVYVMSENLATFTKYSGYD 1007
                N S +++EDG Y R+K + L Y     L+ K  + R + Y  + NL T+T YSG D
Sbjct: 909  FKLLN-STYFIEDGSYLRLKDVSLSYNFKGKLLQKWGITRLQPYFTATNLLTWTSYSGMD 967

Query: 1008 PEI-----GGGVMSIDRGIYPQARSYMLGVQIGF 1036
            PE+      G V  ID G YP +RSY+ G+ + F
Sbjct: 968  PEVNQWGNSGTVQGIDWGTYPHSRSYVFGINVEF 1001