Pairwise Alignments

Query, 1036 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  453 bits (1165), Expect = e-131
 Identities = 342/1097 (31%), Positives = 535/1097 (48%), Gaps = 130/1097 (11%)

Query: 13   LLLLPMLSY-----AQNNEITGNVTLKSNGEPLPGVAVMIEGSGTGTITDVDGKYSIQAP 67
            +LL+  L Y     AQ+++I+G V +     P+ G  + ++G+  GTITD+DG +S++  
Sbjct: 22   VLLICFLGYISTVSAQSHKISG-VVVDEGKSPIIGATIQVKGANNGTITDIDGNFSLEVK 80

Query: 68   SGST-LVFSLLGMKPQKVTISNQTNLNVQLEENLSALEEVVVVGYGVQKKSVVTGAISSV 126
            +    L  S +G     V +  +  + + ++E    L+EVVV+GYG  +KS ++G++S+V
Sbjct: 81   NPKAQLQISYIGFTTITVPVQLKGKMTITMQEASRNLDEVVVIGYGTVRKSDLSGSVSAV 140

Query: 127  KA-SDLESMPINRVEQALQGRTSGLTIASSSGQPGSGATVRVRGLTTF-GNNDPLWVVDG 184
               ++ E MPI   +Q LQGR +G++IA++SG PG+G  +++RG++T  GN DPL+VVDG
Sbjct: 141  SMKNEAEIMPITSADQFLQGRIAGVSIAANSGAPGAGMNIQIRGVSTLSGNTDPLYVVDG 200

Query: 185  VVVD------NGGIGYLNQ------------SDIESIEVLKDAASQAIYGARAAAGVILV 226
              ++      NGG   L+Q            +DIESI+VLKDA++ AIYG+RA  GVIL+
Sbjct: 201  FPIEAATASVNGGTSELSQQPAMNPLASINPNDIESIQVLKDASATAIYGSRATNGVILI 260

Query: 227  TTKKGEAGKIRVNYNGYYGTSAPAKKLDLLDASQYAMIRNEAATNA------GNTAPFSN 280
            TTK+G+ GK+ VNYN     S  +K+ +LL+A  YA+  NE    +      GN  P + 
Sbjct: 261  TTKQGKEGKVNVNYNARVDISNISKRYNLLNAHDYALFENELDRTSNGYDMQGNVIPSTK 320

Query: 281  PASYG---------AGTDWQDLIFNNSAQRQNHELSISGGNEKSTFYTSFGYLDQEGIVA 331
               +            TDWQDL++  +A  Q+H+L+++GGN+ + +  + GY DQEGI+ 
Sbjct: 321  VPRHTDDALERYKIYSTDWQDLMY-QTAVSQDHQLAVNGGNKMTQYNITAGYTDQEGIIM 379

Query: 332  SEISKYKRINFRLNSEHQLASWLKVGQNLGYAHDKSIGLGNTNSEFGGPLSSAINLDPMT 391
            +  +  +R +FRLN + +LA  L +  N  Y+  +     ++ S          +++ M 
Sbjct: 380  N--TGLERYSFRLNLKSELAKRLVLQLNTSYSQTEQKQTSHSQSS---------SMNQMV 428

Query: 392  PAIISDPN--IAGQPPYSTNPVIRDAMGRPYGISTIVAQEMTNPLAYTQTRLGNYSWSDN 449
              I++     + G   Y    V       PY    I+A E+ + L   Q R         
Sbjct: 429  RRILTTKPTLMPGDQIYEDENVEYVPADNPY----IMATELKDIL---QQRF-------- 473

Query: 450  FVGNVYAEAEPIKGLKLRSTLGAKLSYWGSESFT------PIFYLNATTVSNQTN--FTR 501
            F+ N            L    G  LS+ G+ SF         +Y   T   N  +    R
Sbjct: 474  FILNA----------SLTYNFGKGLSWKGAGSFNRTDGSRSTYYPIGTNAGNSAHGMAFR 523

Query: 502  NQNRRFDWNLENTISYSKAIDQHNFTVLLGQGAYLDNRGRSATVTFFNVPANNFEDASLN 561
             ++ R +  LE T++Y +   +H+    +    + D + ++  +   +   N+     L 
Sbjct: 524  GEDNRQNIVLETTVNYDRKFKKHHHINAVLGYTHEDRQRKTLAIQVGDFAGNDL----LY 579

Query: 562  FKVPNDQRNADGSEGAGHT-VSSLFARANYNYTEKYLLEALVRRDGSSRFGPNNRYGIFP 620
            + +       D S     T +SS   R NY   ++Y+  A  R DGSS     NR+  FP
Sbjct: 580  YAIGEGTNTMDKSSSVIQTKLSSFLGRMNYTLYDRYIFTATGRYDGSSLLASGNRWSFFP 639

Query: 621  SFSAGWVITQEAFWPTNPVVDFLKVRGGYGIVGNDNIGDFAFLSTIGSGRNYTIGNTGSY 680
            SF+  W I QE F    P +  +K+R  YG+ GN +I   A L+ +   R+Y   + G+ 
Sbjct: 640  SFAVAWRINQEKFMKDIPAISNIKLRLSYGVTGNQSIAYAAPLAIMNHVRSY---SGGAV 696

Query: 681  VIGYSPNAPSNPDLKWEETSQANIGFEATLFGD-FNITFDWYKKVTKGILQNPRIPGYVG 739
              G      +NP+L WE T+  N G +     + F +T + Y++ TK +L N  +P   G
Sbjct: 697  THGMVNGKLANPNLGWESTATYNAGLDLGFIDNRFRVTMNVYQRTTKDMLMNFGLPLSSG 756

Query: 740  AISNPAANVADMENRGVELELGYRKMLGELELSLNGNISYLENEVTNL-GTDI---SYLS 795
              S P  N+  M N+G ELE     + G ++ +L GNI    N+V ++ G ++   SYL+
Sbjct: 757  YGSIP-YNMGKMTNKGFELEASADILTGRVKWTLGGNIYLNRNKVDDISGNELLGTSYLA 815

Query: 796  GGQSFQASSYPITRTAVGQSMNSFYGFQTQGIFQTIEDVENYTNTDGEMIQPNAQPGDFI 855
            GG  F  S   I  T  G  + SFYG+   G++Q   + +           P A PG   
Sbjct: 816  GGGVFSQS---IHITKAGYPVGSFYGYVVDGVYQNEAEAKL-----APFDTPQATPGSLR 867

Query: 856  WADLN-----KDGQITEADRTFIGNPTPTWSYGFTANFQWNNFDLVFFGQGVAGNKIFQG 910
            + D++      DG+IT  D T IG   P ++YG  +   W    L     G  G  I   
Sbjct: 868  FKDISGPDGLPDGKITSDDMTIIGTAEPKFNYGINSELSWKGLTLSMIFTGRVGGDI-AN 926

Query: 911  LRRLDI-----SNANWQTEVL-NRWTGPGTSNDYPRIVEGDPNKNFNNP-SDFYLEDGDY 963
            L R  +     +N N + E    RW G GTSN YP +     +  FN   S F LEDG +
Sbjct: 927  LNRYFLDSFTDTNDNIRAEAWEGRWQGEGTSNFYPAVNGSQGSSYFNKRFSTFLLEDGSF 986

Query: 964  FRIKTLQLGYTLPKNLISKVAMNRARVYVMSENLATFTKYSGYDPEIG--GGVMS--IDR 1019
            FR+K L L Y    +L     +   RV+    N+ T T YSGYDPE+    G MS  +D 
Sbjct: 987  FRLKNLTLAYQF--SLKKLRWLRSVRVFGTVTNVFTITNYSGYDPEVSITSGAMSPNVDY 1044

Query: 1020 GIYPQARSYMLGVQIGF 1036
              YP +R+Y +G+ + F
Sbjct: 1045 AAYPSSRTYSMGINLAF 1061