Pairwise Alignments

Query, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1147 a.a., transcription-repair coupling factor from Pantoea sp. MT58

 Score =  550 bits (1418), Expect = e-160
 Identities = 301/698 (43%), Positives = 439/698 (62%), Gaps = 23/698 (3%)

Query: 363  ESEKQVERLQNIFQEL----------DPTLKIQ-SLPVSIRE-GFVDH--STMIACYTDH 408
            ESE + E LQ +   +          D T+  + SL +   E GF+D   +  + C +D 
Sbjct: 390  ESEGRRETLQELLARIKLRPQPVHRFDETVDDRFSLMIGASERGFIDTQGNRALICESD- 448

Query: 409  QIFERYHRYKSHKKASKTKALTLKELKTLQAGDYVVHVDYGVGRFAGLEKVEVNDNFQEA 468
             + ER  R +   + +    + ++ L  L  G  VVH+++GVGR+ GL  +E      E 
Sbjct: 449  LLGERVSRRRQDTRRTINPDILIRNLAELSPGQPVVHLEHGVGRYIGLTTLEAGGIQAEY 508

Query: 469  VRLIFRDDDLLYVNIHSLHKISKYSGQEGTLPTMSKLGSPEWENKKKKVKRKVKDIAKDL 528
            + L + +D  LYV + SLH IS+Y+G       + KLGS  W   ++K   KV+D+A +L
Sbjct: 509  LMLSYANDAKLYVPVSSLHLISRYAGGADDNAPLHKLGSDAWSRARQKAAEKVRDVAAEL 568

Query: 529  IALYAKRRNASGHQYAPDSVLQVELESSFIFEDTPDQAVATGDVKADMEKPYPMDRLVCG 588
            + +YA+R   SG  +  +         SF FE TPDQA A   V +DM +P  MDRLVCG
Sbjct: 569  LDIYAQRAAKSGFAFKHNREQYQLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCG 628

Query: 589  DVGFGKTEVAIRAAFKAINDRKQVAVLVPTTILAMQHYRTFKERLEGFPVKVDYINRFRT 648
            DVGFGKTEVA+RAAF AI + KQVAVLVPTT+LA QHY  F++R   +PV+++ ++RFRT
Sbjct: 629  DVGFGKTEVAMRAAFLAIENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRT 688

Query: 649  TKQVKEITKQVTSGEIDILVGTHRIVNKDVQFKDLGLLIIDEEQKFGVKVKDQLKELRVN 708
             K+  ++ +Q + G+IDIL+GTH+++  D+++ DLGLLI+DEE +FGV+ K+++K +R +
Sbjct: 689  AKEQAQVLEQASDGKIDILIGTHKLLMSDLKWHDLGLLIVDEEHRFGVRHKERIKAMRAD 748

Query: 709  VDVLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPVTTEIHTFEEEVIRDAVSRELQR 768
            VD+LTLTATPIPRTL+ ++ G RDLS+IATPP  R  V T +  F++ VIR+A+ RE+ R
Sbjct: 749  VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREFDDLVIREAILREVLR 808

Query: 769  GGQVFFVHNRVGEIDSIANLIMRLVPDAKIAGAHGQMDGKQLEKIMVKFIEGEFDVLVST 828
            GGQV++++N V  I+  A  +  LVP+A++A  HGQM  + LE++M  F    F+VLV T
Sbjct: 809  GGQVYYLYNDVENIEKAAQRLSELVPEARVAIGHGQMRERDLERVMNDFHHQRFNVLVCT 868

Query: 829  NIIESGLDIPNANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTSPMSGLTAEARK 888
             IIE+G+DIP ANTIII RA  FGL+ LHQ+RGRVGRS+ +AY +LLT     +TA+A K
Sbjct: 869  TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKSMTADAHK 928

Query: 889  RLQTLEEFSDLGDGFKVAMRDLDIRGAGNLLGAEQSGFITDLGFEMYHKILDEAVQELKE 948
            RL+ +    DLG GF +A  DL+IRGAG LLG EQSG +  LGF +Y ++L+ AV  LK 
Sbjct: 929  RLEAIASLEDLGAGFALATHDLEIRGAGELLGDEQSGQMETLGFTLYMELLENAVDALKA 988

Query: 949  NEFASLFEVDLKEKVKVLVQDCVIETDMELLIPEDYVSNISERLNLYSKLDNIKTEEALT 1008
                SL ++   +          +E  M  L+PE ++ ++S RL+LY ++ + + EE L 
Sbjct: 989  GREPSLEDLTSNQ--------TEVELRMPALLPETFIPDVSTRLSLYKRIASAEVEEELQ 1040

Query: 1009 KFAHAVSDRFGPIPPVVEDLMETVRLRWLAEGLGFEKL 1046
            +    + DRFG +P    +L++   +R  A  +G  K+
Sbjct: 1041 ELKVEMIDRFGLLPDPARNLLDVAIIRLKARAVGLRKI 1078



 Score = 70.9 bits (172), Expect = 5e-16
 Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 13/214 (6%)

Query: 22  TIQSSVGSNFAFKGISGSMDMVLLATFINLRHSSHLIIAHDKEEAAYLASDLSSLLDRVT 81
           T+    G +     I G+   V  A+         L+I  D + A  L  ++    D   
Sbjct: 8   TLPVKSGDHRQLGQIIGAAHAVECASITEHHAGPVLMITPDTQTALRLLDEIRQFTDLPV 67

Query: 82  PHI-----FPSSYKRPYQHEEVDNANVLMRAEILNKVLSSDTKMEIIVSYPEALYEKVIN 136
            H+      P     P+Q       + L +  ++ + +        ++     L ++V  
Sbjct: 68  THLADWETLPYDSFSPHQDIISARLSTLYQLPVMQRGM--------LIMPVNTLMQRVCP 119

Query: 137 KKSLQENTFTAKVGEKVDVEFITELLSTYDFEKTDFVYEPGQFAIRGGIIDVFSFANEYP 196
              L  +    K G+K+  + + + L    +   D V E G++A RG ++D+F   ++ P
Sbjct: 120 HSFLHGHALVMKQGQKLSRDRLRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPMGSDQP 179

Query: 197 YRIELFGKEIESIRTFDTESQLSEESLDHISIIP 230
           YRI+ F  EI+S+R FD +SQ + E++  I+++P
Sbjct: 180 YRIDFFDDEIDSLRLFDVDSQRTLEAVTEINLLP 213