Pairwise Alignments

Query, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1148 a.a., transcription-repair coupling factor from Klebsiella michiganensis M5al

 Score =  569 bits (1466), Expect = e-166
 Identities = 364/1084 (33%), Positives = 576/1084 (53%), Gaps = 100/1084 (9%)

Query: 36   ISGSMDMVLLATFINLRHSSHLIIAHDKEEAAYLASDLSSLLDRVTPHIFPSSYKRPYQH 95
            ++G+    L+A          ++IA D + A  L  ++    D +   +       PY  
Sbjct: 22   LTGAACATLVAEMAERHGGPVVLIAPDMQNALRLNDEIRQFTDSMVAGLADWE-TLPYDS 80

Query: 96   EEVDNANVLMRAEILNKVLSSDTKMEIIVSYPEALYEKVINKKSLQENTFTAKVGEKVDV 155
                   +  R   L ++ + +  + II      L ++V     L  +    K G+++  
Sbjct: 81   FSPHQDIISSRLATLYQLPTMERGVLIIPV--STLMQRVCPHNFLHGHALVMKKGQRLSR 138

Query: 156  EFITELLSTYDFEKTDFVYEPGQFAIRGGIIDVFSFANEYPYRIELFGKE--------IE 207
            + +   L +  +   D V E G++A RG ++D+F   +E PYR++ F  E        ++
Sbjct: 139  DALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDVD 198

Query: 208  SIRTFDTESQLS-----EESLDHISI------------IPNVQTKLMQEVRQS------- 243
            S RT +  + ++     E   D  +I            +      + Q+V +        
Sbjct: 199  SQRTLEEVASINLLPAHEFPTDQAAIELFRSQWRDRFEVKRDAEHIYQQVSKGTLPAGIE 258

Query: 244  --------------FTDFLPKDTCVWIKDVQFTMDMLDNAFEKARQQF-----DKIVDQT 284
                          F+ F  K   V   D++ + +   N   + R +F     D +    
Sbjct: 259  YWQPLFFNEPLPPLFSYFPAKTLIVNTGDLEASAERFQN---ETRARFENRGVDPMRPLL 315

Query: 285  GSKQLVLQPENLFDDGAAFLSSLDRLTKIEFGNQYHLPTSKVFDFDIKPQPSFNKNFDLL 344
             ++QL L+ + LF       S L +  +++      L T ++ +        + K  +L 
Sbjct: 316  PTEQLWLRSDELF-------SELKKWPRVQ------LKTERLAEKAANTNLGYQKLHELA 362

Query: 345  VENL----VDNERKGLLN-----IICSESEKQVERL-----------QNIFQELDPTLKI 384
            ++      +DN R+ L +     I   ESE + E L           ++I +  + T   
Sbjct: 363  IQAQNKAPLDNLRRFLESFSGPVIFSVESEGRREALGEMLARIKIAPKHILRLEEATANG 422

Query: 385  QSLPVSIRE-GFVDHSTMIACYTDHQIF-ERYHRYKSHKKASKTKALTLKELKTLQAGDY 442
            + L +   E GF+D    +A   +  +  ER  R +   + +      ++ L  L  G  
Sbjct: 423  RYLMIGAAEHGFIDSQRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482

Query: 443  VVHVDYGVGRFAGLEKVEVNDNFQEAVRLIFRDDDLLYVNIHSLHKISKYSGQEGTLPTM 502
            VVH+++GVGR+AG+  +E      E + L + +D  LYV + SLH IS+Y+G       +
Sbjct: 483  VVHLEHGVGRYAGMTTLEAGGINGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPL 542

Query: 503  SKLGSPEWENKKKKVKRKVKDIAKDLIALYAKRRNASGHQYAPDSVLQVELESSFIFEDT 562
             KLG   W   ++K   KV+D+A +L+ +YA+R   +G+ +  D          F FE T
Sbjct: 543  HKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKAGYAFKHDKEQYQLFCDGFPFETT 602

Query: 563  PDQAVATGDVKADMEKPYPMDRLVCGDVGFGKTEVAIRAAFKAINDRKQVAVLVPTTILA 622
            PDQA A   V +DM +P  MDRLVCGDVGFGKTEVA+RAAF A+ + KQVAVLVPTT+LA
Sbjct: 603  PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLA 662

Query: 623  MQHYRTFKERLEGFPVKVDYINRFRTTKQVKEITKQVTSGEIDILVGTHRIVNKDVQFKD 682
             QH+  F++R   +PV+++ ++RFR+ K+  +I +QV  G+IDIL+GTH+++  DV+ +D
Sbjct: 663  QQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQPDVKLRD 722

Query: 683  LGLLIIDEEQKFGVKVKDQLKELRVNVDVLTLTATPIPRTLHFSLMGARDLSVIATPPPN 742
            LGLLI+DEE +FGV+ K+++K +R +VD+LTLTATPIPRTL+ ++ G RDLS+IATPP  
Sbjct: 723  LGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782

Query: 743  RQPVTTEIHTFEEEVIRDAVSRELQRGGQVFFVHNRVGEIDSIANLIMRLVPDAKIAGAH 802
            R  V T +  ++  V+R+A+ RE+ RGGQV++++N V  I   A  +  LVP+A+IA  H
Sbjct: 783  RLAVKTFVREYDALVVREAILREVLRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842

Query: 803  GQMDGKQLEKIMVKFIEGEFDVLVSTNIIESGLDIPNANTIIINRAHMFGLSDLHQMRGR 862
            GQM  ++LE++M  F    F+VLV T IIE+G+DIP ANTIII RA  FGL+ LHQ+RGR
Sbjct: 843  GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGR 902

Query: 863  VGRSNKKAYCYLLTSPMSGLTAEARKRLQTLEEFSDLGDGFKVAMRDLDIRGAGNLLGAE 922
            VGRS+ +AY +LLT     +T +A+KRL+ +    DLG GF +A  DL+IRGAG LLG +
Sbjct: 903  VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGED 962

Query: 923  QSGFITDLGFEMYHKILDEAVQELKENEFASLFEVDLKEKVKVLVQDCVIETDMELLIPE 982
            QSG +  +GF +Y ++L+ AV  LK     SL +        +  Q   +E  M  L+P+
Sbjct: 963  QSGSMETIGFSLYMELLENAVDALKAGREPSLED--------LTSQQTEVELRMPSLLPD 1014

Query: 983  DYVSNISERLNLYSKLDNIKTEEALTKFAHAVSDRFGPIPPVVEDLMETVRLRWLAEGLG 1042
            D++ +++ RL+ Y ++ + K E  L +    + DRFG +P    +L++  RLR  A+ LG
Sbjct: 1015 DFIPDVNTRLSFYKRVASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLG 1074

Query: 1043 FEKL 1046
              KL
Sbjct: 1075 IRKL 1078