Pairwise Alignments

Query, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 1196 a.a., transcription-repair coupling factor from Bifidobacterium breve UCC2003

 Score =  590 bits (1520), Expect = e-172
 Identities = 360/973 (36%), Positives = 539/973 (55%), Gaps = 93/973 (9%)

Query: 149  VGEKVDVEFITELLSTYDFEKTDFVYEPGQFAIRGGIIDVFSFANEYPYRIELFGKEIES 208
            VGE + ++   + L    + + + V + G+FA+RGGI+DVF     +P RIE FG EI++
Sbjct: 183  VGEDLPLDEAAKRLIENAYTRVELVMDRGEFAVRGGILDVFPPTAPHPVRIEFFGDEIDT 242

Query: 209  IRTFDT-------------------ESQLSEESLDH----ISIIPNVQTKL--------- 236
            I+ F                     E QL++         I  IPN +  L         
Sbjct: 243  IKEFHASDQRTYGEGLKTIWATACRELQLTDAVRTRAKALIGSIPNAEDMLESIANAIPV 302

Query: 237  --MQEVRQSFTD-------FLPKDTCVWIKDVQFTMDMLDNAFEKARQQFDKIVDQTGSK 287
              M+ +  +  D        LPK   V + D +      ++  + A +          S 
Sbjct: 303  EGMESLMPALVDHLEPVGSMLPKHAVVLLSDPEKLRRSAEDLAKTANEFLAASWHVAASG 362

Query: 288  QLVLQPENLFDDGAAFLSSLDRLTKIEFGNQYHLPTSKVFDFDIKPQPSFNKNFDLL--- 344
                 P +   D A+FL   + ++ +E+      P  ++  F +    + +   D     
Sbjct: 363  HGAGAPISF--DEASFLDYAETISSLEYSEH---PVIRLTSFGVDTTLAGHVQLDAQNPA 417

Query: 345  ------------VENLVDNERKGLLNIICSESEKQVERLQNIFQELDPTLKIQSLPVSIR 392
                        ++ L+D    G    I + +   + RL+        T    ++     
Sbjct: 418  EFRGDEAKASQGIDGLLD---AGFHVTITAAAAGTLARLKRALNTTGITT-FDTIRSQAI 473

Query: 393  EGFVDHSTMIACYTDHQIFERYHRYKSHKKASKT-KALTLKELKTLQAGDYVVHVDYGVG 451
            +GFVD++  IA  T+  +  R       K   +  KA+ L ELK    GDYVVH  +G+G
Sbjct: 474  DGFVDNAAKIALLTERDLTGRSSAVAVAKTPKRRRKAIDLVELKK---GDYVVHEQHGIG 530

Query: 452  RFAGLEKVEVNDNFQEAVR--LIFR--------DDDLLYVNIHSLHKISKYSGQEGTLPT 501
            RF  + +  +     +  R  L+            D L++    L ++SKY G E   P 
Sbjct: 531  RFIEMRQRTIGTGANKTTREYLVIEYAPSKRGAPADKLFIPTDQLDQVSKYIGAEA--PK 588

Query: 502  MSKLGSPEWENKKKKVKRKVKDIAKDLIALYAKRRNASGHQYAPDSVLQVELESSFIFED 561
            ++KLG  +W   K K ++ V +IA DLI LY+ R+ A G  ++PD+  Q ELE +F +++
Sbjct: 589  LNKLGGSDWAATKAKARKHVHEIADDLIKLYSARQRAKGFAFSPDTPWQKELEDAFPYQE 648

Query: 562  TPDQAVATGDVKADMEKPYPMDRLVCGDVGFGKTEVAIRAAFKAINDRKQVAVLVPTTIL 621
            T DQ     +VK+DMEKP PMDRL+CGDVGFGKTE+A+RAAFKA+ D KQVAVLVPTT+L
Sbjct: 649  TADQLTTIDEVKSDMEKPVPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLL 708

Query: 622  AMQHYRTFKERLEGFPVKVDYINRFRTTKQVKEITKQVTSGEIDILVGTHRIVNKDVQFK 681
              QH  TF +R EGFPV V  ++RF+TTK++    + + +G +D+++GTH+++N  ++FK
Sbjct: 709  VQQHQETFTDRFEGFPVNVAAMSRFQTTKEINATIEGLENGTVDVVIGTHKLLNPKIKFK 768

Query: 682  DLGLLIIDEEQKFGVKVKDQLKELRVNVDVLTLTATPIPRTLHFSLMGARDLSVIATPPP 741
            DLGL+IIDEEQ+FGV+ K+ LK LR NVDVL+L+ATPIPRTL  ++ G R++S +ATPP 
Sbjct: 769  DLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPE 828

Query: 742  NRQPVTTEIHTFEEEVIRDAVSRELQRGGQVFFVHNRVGEIDSIANLIMRLVPDAKIAGA 801
            +R PV T +  +E+  +  AV REL RGGQVF+VHNRV +I SIA+ I  LVP++++  A
Sbjct: 829  DRLPVLTYVGAYEDAQVTAAVRRELLRGGQVFYVHNRVQDISSIADKIHTLVPESRVGIA 888

Query: 802  HGQMDGKQLEKIMVKFIEGEFDVLVSTNIIESGLDIPNANTIIINRAHMFGLSDLHQMRG 861
            HG+M  KQL++I+  F   + DVLV T IIE+GLDI NANT+I++ A  FGLS LHQ+RG
Sbjct: 889  HGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRG 948

Query: 862  RVGRSNKKAYCYLLTSPMSGLTAEARKRLQTLEEFSDLGDGFKVAMRDLDIRGAGNLLGA 921
            RVGR  ++AY Y L  P   +T ++  RL T+ + + LG GF VAM+DL++RG GNLLG 
Sbjct: 949  RVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGD 1008

Query: 922  EQSGFITDLGFEMYHKILDEAVQELKENEFASLFEVDLKEKVKVLVQDCVIETDMELLIP 981
            EQSG I  +GF++Y +++ EAV++ KE +       +  E V V      I+  +E  IP
Sbjct: 1009 EQSGHIEGVGFDLYVRMVSEAVEKYKEPD-------EDVEPVSV-----SIDLPIEASIP 1056

Query: 982  EDYVSNISERLNLYSKLDNIKTEEALTKFAHAVSDRFGPIPPVVEDLMETVRLRWLAEGL 1041
             DY+ +   RL  Y KL + + E  L      ++DR+G  P   E L +  RL++ A  L
Sbjct: 1057 IDYIDSDKLRLEAYRKLASARNEADLKDLKEELTDRYGKPPVEFETLFDVARLKFKARKL 1116

Query: 1042 GFEKLVLKSGQMK 1054
            G  +++ +S +++
Sbjct: 1117 GVSEILAQSNRVR 1129