Pairwise Alignments

Query, 294 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 322 a.a., Site-specific tyrosine recombinase from Xanthomonas campestris pv. campestris strain 8004

 Score =  159 bits (403), Expect = 6e-44
 Identities = 94/290 (32%), Positives = 161/290 (55%), Gaps = 8/290 (2%)

Query: 5   FINYLEHEKRASAHTVLAYEKDLEQFKEFLEQSFETADLTQAGHGEIRAWIVDLVEQGLS 64
           F+ +L+ E++ SAHT+ AY +DL     +      + D+ Q    ++R ++     +GLS
Sbjct: 34  FLAHLQIERQVSAHTLDAYRRDLAALIGWASAQ-GSEDVAQLDSAQLRKFVTAEHRRGLS 92

Query: 65  ATTVNRKMATLRSFYKFLLRSGEITKDPTYKLRALKTSKKLPEFVQESTMDQLLNDLEYE 124
             ++ R+++  RS+Y +LL+ G I   P   LRA K  +KLP+ +      +L+ ++  +
Sbjct: 93  PKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEAVRLV-EVPTD 151

Query: 125 AGFEGQRDKMVMEFLYLTGVRLSELIGLTWKDIDIQGKTVKVYGKRKKQRIIPLTNTLIE 184
           A   G RD+ ++E  Y +G+RLSEL  L W+D+D+    V V GK  KQR++P+ +  + 
Sbjct: 152 APL-GLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKGGKQRLVPVGSHAVA 210

Query: 185 NIISYKKDFKETFSNVNESDYFIVTISKKQAYPMIIYRIVRKYLDLFAQTSKRSPHLLRH 244
            + ++++D   +             IS++     I    VR+   +F       PH+LRH
Sbjct: 211 ALRAWQRDSGGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQ--GMFKHV---HPHMLRH 265

Query: 245 TFATHLLNKGADLNAVKDLLGHANLAATQVYTHNSMEKLKAVFDQAHPKA 294
           +FA+H+L    DL  V++LLGH+++A TQ+YTH   + L  V+D AHP+A
Sbjct: 266 SFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRA 315