Pairwise Alignments

Query, 593 a.a., transcription termination factor Rho from Echinicola vietnamensis KMM 6221, DSM 17526

Subject, 722 a.a., transcription termination factor rho (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  579 bits (1493), Expect = e-169
 Identities = 316/592 (53%), Positives = 413/592 (69%), Gaps = 21/592 (3%)

Query: 13  SELKEIAEELGVKNFKSLKKDDLIYAILDQQAITP--EKALPKKKPAK-AEADKPAPDTP 69
           + + E AE   V+N K + K     A+ ++  + P  EKA P ++  K  + +KPA    
Sbjct: 139 ANIAEKAENKEVENAKPIVKPTEEKAVAEKTVVAPAAEKATPTQETEKKVKENKPA--VA 196

Query: 70  EKKAEQKPDAEEGKDTKPKFKRQNVTESKKEDTP--KAEEKPAKK---PKEAPKERKPRR 124
           EK    KP     K + P    ++   S ++D      E+ P++K   P E   + +  +
Sbjct: 197 EKPVIAKPQ----KKSAPVIDEESTILSSEDDDDFIPIEDLPSEKIELPTELFGKFEATK 252

Query: 125 SDAPKADNKPDSKPEKKAESKPEAKPDAQASDENRPRSFRPRRKAVIDEEAQRVAT--ER 182
           ++  +A  +   +P+++  S+P+ +       +N   +      A  +   QR     +R
Sbjct: 253 AETAQAAPEQAPQPQQQQHSQPQQRQRIVRPRDNNNNAGNNNVNANNNNNFQRNNNNNQR 312

Query: 183 PQEQEVELPKRKNFKDISDEQPSQPTNGNSKKKYASLVKEFDGIIENEGVLEIMSDGYGF 242
           P  Q+    ++ N   +++  P+       K        EFD I+   GVLEIM DGYGF
Sbjct: 313 PPMQQRPAQQQNN---VAENLPAVQQQPERKVIEREKPYEFDDILSGVGVLEIMQDGYGF 369

Query: 243 LRSLDYNYLASPDDIYVSPSQIKLFGLKTGDNIKGQIRPPKEGEKYFALLKVASVNGKTT 302
           LRS DYNYL+SPDDIYVS SQIKLFGLKTGD ++G IRPPKEGEKYF L+KV+ +NG+  
Sbjct: 370 LRSSDYNYLSSPDDIYVSQSQIKLFGLKTGDVVEGIIRPPKEGEKYFPLVKVSKINGRDA 429

Query: 303 EEIRDRIPFEYLTPLFPEERLNLTTR--ADNFSTRIVDLFAPIGKGQRGMIVAQPKTGKT 360
             +RDR+PFE+LTPLFP+E+  L     +D+ S R+VDLFAPIGKGQR +IVAQPKTGKT
Sbjct: 430 AFVRDRVPFEHLTPLFPDEKFRLCKGGYSDSMSARVVDLFAPIGKGQRALIVAQPKTGKT 489

Query: 361 VLLQKIANAIAENHPECHLMILLIDERPEEVTDMARSVKAEVVSSTFDEQAERHVKVSSM 420
           +L++ IANAIA NHPE ++++LLIDERPEEVTDMARSV AEV++STFDE AERHVK++ +
Sbjct: 490 ILMKDIANAIAANHPEVYMIMLLIDERPEEVTDMARSVNAEVIASTFDEPAERHVKIAGI 549

Query: 421 VLEKAKRMVECGHDVVILLDSITRLARAYNTVVPSSGKILSGGVDANALHKPKRFFGAAR 480
           VLEKAKR+VECGHDVVI LDSITRLARAYNTV P+SGK+LSGGVDANALHKPKRFFGAAR
Sbjct: 550 VLEKAKRLVECGHDVVIFLDSITRLARAYNTVSPASGKVLSGGVDANALHKPKRFFGAAR 609

Query: 481 NVENGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELSLDRKLSNRRIYPAIDVPGSGT 540
           N+ENGGSLTIIATAL++TGSKMDEVIFEEFKGTGNMEL LDR LSN+RI+PA+++  S T
Sbjct: 610 NIENGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRNLSNKRIFPAVNITASST 669

Query: 541 RREDLLMEKEEMQRVWILRKLMSDMTSQEAMEFLLQRMKGTRDNAEFLISMN 592
           RR+DLL++K  + R+WILRK ++DM   EAM+F+  R++ TRDN EFL+SMN
Sbjct: 670 RRDDLLLDKTTLDRMWILRKYLADMNPIEAMDFVKDRLEKTRDNDEFLMSMN 721



 Score = 88.6 bits (218), Expect = 8e-22
 Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 18/235 (7%)

Query: 1   MYNIEELKIRLLSELKEIAEELGVKNFKSLKKDDLIYAILDQQAITPEKALPKKKPAKAE 60
           MYNI +L  + LSEL+ IA+ELG+K   S KK++L+Y ILD+QAI       KK  A+  
Sbjct: 1   MYNIIQLNDKNLSELQVIAKELGIKKADSFKKEELVYKILDEQAIA---GATKKVAAEKL 57

Query: 61  ADKPAPDTPEKKAEQKPDAEEGKDTKPKFKRQNVTESKKEDTPKAEEKPAKKPKEAPKER 120
            ++   D  ++     P  EE     P  K   VT++K       E  PA KP++ PKE 
Sbjct: 58  KEERKGDKNKRSRTAAPKKEE--KVAPAAKNAEVTKNK-------ENAPAAKPQQQPKEE 108

Query: 121 KPRRS-DAPKADNKPDSKPEKKAESKPEAKPDAQASDENRP-RSFRPRRKAVIDEEAQRV 178
              ++ +AP A+ K +    K+   +P    +     EN+   + +P  K   +E+A   
Sbjct: 109 AANKAKEAPVAEPKAEKAAPKRKVGRPRKDANIAEKAENKEVENAKPIVKPT-EEKAVAE 167

Query: 179 ATERPQEQEVELPKRKNFKDISDEQPS---QPTNGNSKKKYASLVKEFDGIIENE 230
            T      E   P ++  K + + +P+   +P     +KK A ++ E   I+ +E
Sbjct: 168 KTVVAPAAEKATPTQETEKKVKENKPAVAEKPVIAKPQKKSAPVIDEESTILSSE 222